Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq21 138 2e-27 seq10 138 2e-27 >seq21 Length=10368520 Score = 138 bits (152), Expect = 2e-27 Identities = 216/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||||||| ||| |||||| || || || || Sbjct 8616538 CATCCGGCACATGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 8616479 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| ||||||||||| |||| || |||| || ||||| |||||||||| Sbjct 8616478 TCAGTGATGCCGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCC 8616419 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| |||||||||||||| |||| | | || || || || || || || || || | Sbjct 8616418 AGTACTCCGGGGAGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGGGCACCAA 8616359 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || ||| ||||||| |||| || || | || || || | Sbjct 8616358 TCTCCACCATGCTTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTG 8616299 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| || | |||||| || || || || || || || |||||| Sbjct 8616298 GATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCT 8616239 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 8616238 CCTCTCCTG 8616230 >seq10 Length=30184877 Score = 138 bits (152), Expect = 2e-27 Identities = 225/320 (70%), Gaps = 3/320 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 10355239 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 10355180 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | |||||||| | ||| || |||||||| |||||||||||| | || | Sbjct 10355179 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGTG 10355120 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || || |||| || ||||| ||||||||||| || || | || | || Sbjct 10355119 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 10355060 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || | |||||||| || ||||| || | ||||| ||| Sbjct 10355059 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 10355001 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 10355000 ATAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 10354941 Query 8587 TTTATTAATAAAAAATAACA 8606 ||||| || || || |||| Sbjct 10354940 ATTATTGATGAATAAGAACA 10354921 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || |||||||| | ||||| ||| ||| || ||||| || ||||||| Sbjct 10353251 ATGAGTCTTGTAGTCTGGAATAACTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAAG 10353192 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | ||||| || || ||||| || || || |||||||| || || || Sbjct 10353191 ATGTCACAGACTCGATTGTGCTCTCTCAGCCATATTGTTGCATACATCATTAGGCCTGGG 10353132 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 10353131 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGG 10353072 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || || || || | ||| ||||||||||| || ||||||||| Sbjct 10353071 TAGATCATCTCTGCTTGAGTATCCTTCACTGTGGGTGGATACATTTCTCCATCAATCATC 10353012 Query 9484 TG 9485 || Sbjct 10353011 TG 10353010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716854702272640