Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1171 145 8e-30 seq1485 134 1e-26 seq3967 87.8 2e-12 seq2660 87.8 2e-12 >seq1171 Length=1699523 Score = 145 bits (160), Expect = 8e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 311111 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 311170 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || |||| ||||| || ||||| ||| | || Sbjct 311171 AGTGACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 311230 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 311231 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 311290 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 ||||||||||||||| |||| || || || ||| ||||| ||||||| ||| ||| Sbjct 311291 AACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGCTGCT 311345 >seq1485 Length=5998752 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 4921647 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 4921706 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 4921707 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4921766 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | |||||| | |||||||||| Sbjct 4921767 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCTTGTCCGACTACAAC 4921826 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 4921827 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 4921873 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 4921419 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 4921478 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 4921479 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4921538 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||||| || | |||||| | |||||||||| Sbjct 4921539 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGGAGATGGTCGCACCTTGTCCGACTACAAC 4921598 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| | ||| ||||| ||||||| ||| Sbjct 4921599 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGC 4921646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 || || |||| || ||||| |||||||| || | |||||| | ||||||||||||| Sbjct 4921970 CGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCTTGTCCGACTACAACATC 4922029 Query 40873 CAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 4922030 CAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 4922073 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884 || ||||| |||||||| || | |||||| | |||||||||||||||||||||| || Sbjct 4921326 GCTGGCAAGCAGCTGGAAGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAGTCC 4921385 Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| | ||| ||||| ||||||| ||| Sbjct 4921386 ACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGC 4921418 >seq3967 Length=4455950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 |||||||||| ||||| |||| | |||||||| | |||| | | ||| | | Sbjct 3639268 AGGTGGACCTTTCCAAAGACATCCGGCACTGGGAGTCCCTGAAGCCCGAGGAGAAGTACT 3639327 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 |||| ||||| || ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 3639328 TCATTTCTCACGTCCTCGCCTTCTTCGCGGCCAGCGACGGCATCGTCAACGAGAACCTGG 3639387 Query 116805 T 116805 | Sbjct 3639388 T 3639388 >seq2660 Length=4220986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 1849819 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 1849760 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 1849759 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 1849700 Query 117162 ACGAGG 117167 | |||| Sbjct 1849699 ATGAGG 1849694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515153148898560