Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq10248 347 8e-91 seq3164 100 2e-16 >seq10248 Length=2452803 Score = 347 bits (384), Expect = 8e-91 Identities = 634/922 (69%), Gaps = 10/922 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAAC-CAGAGACTGTGAGCG-CTTCAAGG---CCCAAAGGAAGTTCATAC 107682 ||||| ||||| || ||| ||||| ||| |||||||| ||| || |||||| Sbjct 40677 TACCTGAACATGACGCAG-GACTGC-AGCAACTTCAAGGAGACCC---GGCGGTTCATTG 40731 Query 107683 AGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATG 107742 ||||||| ||||| | || ||| ||| |||||| | |||||||| ||||| |||| | Sbjct 40732 AGTTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCGTCGCCTACTCCATGGTCATCCACG 40791 Query 107743 AGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACT 107802 | || || || | || || ||||| ||||| | | |||||||| |||||||| |||| Sbjct 40792 ACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCGCTCTATGCCCCCCAGAACATCTACT 40851 Query 107803 GTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTT 107862 ||||||||||||| ||||||||||| | ||| | ||||| || |||||| || Sbjct 40852 GTGTCCACGTGGACAGGAAGTCCCCAGCTGCCTTCCAGGAGGCTGTGCGGGCCATCATAG 40911 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 ||||||| ||||||||||| |||| || ||| ||| || || |||||||||| Sbjct 40912 CCTGCTTTCCCAATGTCTTTGTGGCTAGCCGCCTGGAAGAGGTAGTCTACGCCTCCTGGT 40971 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 || | |||| || ||||| ||||| ||| | ||| || | |||||| | ||||||||| Sbjct 40972 CCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCGTGCCATGGC 41031 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 | ||| | || || || || || || || |||||||| ||||||||||| ||||| || | Sbjct 41032 ACTACATCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAATGCTGAGATTGTAC 41091 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102 ||||| ||| || || |||| ||||| |||||||| ||| || || | || Sbjct 41092 GTGCCCTGAAGGTGCTGCAGGGGCGCAACAGCATGGAGTCAGAGAAGCCCTCAGCCATCA 41151 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA 108162 | | | |||||| |||| | | || ||| | | | || || || | Sbjct 41152 AGCAGGAGCGCTGGCGGTACCACCACGAAGTGGGGAAGTTCATCTTCCGGACAGCCACAA 41211 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 ||| || || || | || | ||||||||||| || || || || | |||| | Sbjct 41212 AGAAACTGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACGCATACATCGTGGTCA 41271 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | |||||||| || || || |||| | ||||| | | || | | || ||| Sbjct 41272 CGCGAGCCTTCGTGCAGCACATCTTCAAGAACCCCATGGCGCAGCAGTTCCTCGAGTGGT 41331 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA 108342 ||| |||||||| ||||| ||||| ||| ||||||||||||| | || || | Sbjct 41332 CCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGCCTGGCG 41391 Query 108343 TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 |||| ||| | | || || ||| | || |||| || |||| ||| | || Sbjct 41392 TGCCGGGCGCCATGCCCCAGAACGACAAATTCCAGCTCTCGGATATGAACGCCCTGCCCC 41451 Query 108403 GGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCT 108462 | || ||||| ||| |||| ||||| || ||||| ||| ||||| || | |||| Sbjct 41452 GCCTGGTCAAATGGGCATACCTGGAGGGTGACACCAGCAAGGGTGCGCCCTACCCGCCCT 41511 Query 108463 GCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 || | || || | | | ||| ||||||| ||||||| || ||| || |||||| | Sbjct 41512 GCACCGGCCGGCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGC 41571 Query 108523 TCCAGAACCATCACCTCTTGGC 108544 ||||| | || ||||||||||| Sbjct 41572 TCCAGCAGCACCACCTCTTGGC 41593 >seq3164 Length=4070944 Score = 100 bits (110), Expect = 2e-16 Identities = 559/881 (63%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 3128526 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 3128585 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| |||| || || | || |||||||||||||| | ||||| | Sbjct 3128586 ATTGAGATGCTTGATAGGCTTCTAAGATCAGTCTATGCCCCTCAGAATTTTTACTGCATT 3128645 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 3128646 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 3128705 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || ||||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 3128706 TTTGACAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 3128765 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| ||| ||||| | Sbjct 3128766 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCCAACTGGAAAT 3128823 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || || | || || || | ||||| || || |||||||| || || || | Sbjct 3128824 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATTAAGACCAACCAGGAAATAGTAGAGA 3128883 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 | || | || ||| | ||||| |||| | || | ||| | ||| Sbjct 3128884 AATTAAAAGCACTTAAAGGTGAAAACAGCTTGGAAACAGAAAAAATGCCTGTTTTTAAAG 3128943 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGA---CACACTGTACCCTACCAGCA-AG 108161 || | ||||| | | | | ||| | | || | | | | || ||| || Sbjct 3128944 AAGCAAGGTGGAAGAAACACCACGAGATTATTGATGGTAAAATAAAGAACACGGGCATAG 3129003 Query 108162 ATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221 | || | | || ||| | | || || || | || | |||||||||||| | Sbjct 3129004 A-CAAACAACTGCCACCTCTCAGTACTCCAATTTTTTCTGGTAGTGCCTATTTTGTAGTT 3129062 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATG 108280 | || ||||| || || ||||| | || | |||| | ||| | |||| || Sbjct 3129063 ACCAGAAGATTTGTAGAATTCGTATTAGAAAGCCGCAAAATACTGAAG-TTCATTGAGTG 3129121 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG 108340 || |||||||| || ||||| || || |||| ||||| || ||||| | ||| || Sbjct 3129122 GGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAG-AATCCCTG 3129180 Query 108341 GA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCA 108396 | | || || | || | |||| | |||||| | | || ||||||| ||| Sbjct 3129181 AAGTCCCAGGTGCAGTTTCTTCTAGTGA---CAAGTACGATGTTTCTGACATGAATGCAC 3129237 Query 108397 TCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATG 108456 | |||||| | ||||||||||||||| || || ||| | || || || || || Sbjct 3129238 TGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATATGTCCAAAGGTGCACCCTACC 3129297 Query 108457 CACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACT 108516 |||| ||| |||||| ||| | | |||| ||| |||| || |||||| ||| Sbjct 3129298 CACCATGCAGTGGAATTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGACCTGAACT 3129357 Query 108517 GGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||| || | ||||| ||| |||| || || ||||||||| Sbjct 3129358 GGATGCTAAAAAACCACCACTTCTTTGCTAATAAGTTTGAC 3129398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348225268141344