Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2660 120 4e-22 seq1281 116 5e-21 seq3967 111 2e-19 seq1085 96.9 5e-15 >seq2660 Length=4220986 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1849694 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1849753 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1849754 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 1849813 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 1849814 CAACCACTCTCTCACC 1849829 >seq1281 Length=8389521 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 || || |||||| || |||||| | | | || || ||||||||||||||||| ||| Sbjct 4669356 TACTTTTTATTAAATGCTTCCAGTAAACGCAGGAGGTGTAAGAACAGATTGATGATGTCC 4669297 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 4669296 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAAA 4669237 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 4669236 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAAACACCAAC 4669177 Query 9408 TCCACTGTTTCACT 9421 || ||||| ||||| Sbjct 4669176 TCTACTGTCTCACT 4669163 Score = 105 bits (116), Expect = 9e-18 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 9450 AAAATTAAA-ATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTT 9508 |||| |||| ||| ||| | |||| | |||||||||| | | ||||| |||||||| Sbjct 4668092 AAAAGTAAAGATCGTCAATATGACAACATACCCTGCTCCAAATCTGCTGAAGTCTCTCTT 4668033 Query 9509 TGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTG 9568 ||| || | ||||| |||||||| ||||||| || |||||||| || || || ||||| Sbjct 4668032 TGACTGCAAGGTATACGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTG 4667973 Query 9569 CATAACGACATGCACATCATAGAAA 9593 || |||| ||||||||||||| Sbjct 4667972 CAAGACGATGGACACATCATAGAAA 4667948 >seq3967 Length=4455950 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 3642357 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3642298 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 3642297 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3642238 Query 36300 C 36300 | Sbjct 3642237 C 3642237 >seq1085 Length=356034 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 333088 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 333147 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || ||||| || ||||| |||||| || || ||| | | || || |||||||||| Sbjct 333148 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCACGG 333206 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 333207 CTCCAGGTAGATGGCAAAAGCCCCAGG 333233 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 320922 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 320981 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || ||||||||||| ||||| ||||| || ||||| || | ||| || | Sbjct 320982 TGAGAGACTGGCTCTGATCGATGAAAGCTCCTCTGTCGGCTGCCATCTTCAGGATGGTTT 321041 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || || || | | |||| | || || |||| Sbjct 321042 TCTGGGAGATCTCCCACACTGTCTTGTAGAGTTGCTTCAAGTCATCGGGAA 321092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658088422247040