Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3967 123 2e-23 seq2660 111 2e-19 >seq3967 Length=4455950 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| |||||||| || ||||| || | ||| ||||| ||||||| ||| | Sbjct 3642357 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3642298 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | |||||| |||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 3642297 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3642238 Query 14014 CTATTAATCGTTCTCC 14029 | | || |||||||| Sbjct 3642237 CCACTACGCGTTCTCC 3642222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 14125 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 ||||||||| | ||| |||||| || |||||||| | ||| |||||||| || ||||| Sbjct 3640224 TCTCTTTAGAATCCTT--AATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTAT 3640167 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||| || ||||| || ||||| || || | ||||| Sbjct 3640166 GTTTTCCATGGCAATCTGGAAGCCATAGAAACAACGGGCTTC 3640125 >seq2660 Length=4220986 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 1849694 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1849753 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || |||||||| || || |||||||||||||| | Sbjct 1849754 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 1849813 Query 14014 C 14014 | Sbjct 1849814 C 1849814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479666498870400