Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3967 120 3e-22 seq2660 105 6e-18 >seq3967 Length=4455950 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| |||||||| || ||||| || | ||| ||||| ||||||| ||| | Sbjct 3642357 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3642298 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| |||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 3642297 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3642238 Query 13802 CTATTAGTCGTTCTCC 13817 | | || |||||||| Sbjct 3642237 CCACTACGCGTTCTCC 3642222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 13913 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 ||||||||| | ||| |||||| || |||||||| | ||| |||||||| || ||||| Sbjct 3640224 TCTCTTTAGAATCCTT--AATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTAT 3640167 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||||| || || ||||| || ||||| ||||| | ||||||| Sbjct 3640166 GTTTTCCATGGCAATCTGGAAGCCATAGAAACAACGGGCTTCTG 3640123 >seq2660 Length=4220986 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 1849694 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1849753 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || |||||||| || || |||||||||||||| | Sbjct 1849754 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 1849813 Query 13802 C 13802 | Sbjct 1849814 C 1849814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478527444915840