Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6983 89.7 5e-13 seq1085 89.7 5e-13 >seq6983 Length=297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| ||||||||||| || ||| || | || |||||||| || Sbjct 196 ACTATTTCTGTACACAGGTTGCTGCATTTGAT-GGTCCCCAGGTTCTGCTGATTGCTCTT 138 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | ||||||||| |||||||| || | ||| ||| || Sbjct 137 CCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTGAGATTCAAT 78 Query 157225 GAT 157227 ||| Sbjct 77 GAT 75 >seq1085 Length=356034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| ||||||||||| || ||| || | || |||||||| || Sbjct 330259 ACTATTTCTGTACACAGGTTGCTGCATTTGAT-GGTCCCCAGGTTCTGCTGATTGCTCTT 330317 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | ||||||||| |||||||| || | ||| ||| || Sbjct 330318 CCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTGAGATTCAAT 330377 Query 157225 GAT 157227 ||| Sbjct 330378 GAT 330380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506949400753920