Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2660 107 2e-18 seq3967 93.3 4e-14 >seq2660 Length=4220986 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 1849696 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 1849755 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 1849756 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 1849815 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 1849816 ACCACTCTCTCACC 1849829 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATTTT 12861 ||||||| ||| |||| || |||| || | || ||| | |||||||| | Sbjct 1844576 AAAAATCTGCATCCAGAGTGAAGACATTGTC--CATTGTTTCCGCCATAACAGCAAAACG 1844633 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | || |||||||| |||||||||||||| | |||||||| || Sbjct 1844634 TTGATATTCTGAAACCCGCTTCTCAAAAAAATTTGTTTTTCCTTCCAGAGAAATATTCTC 1844693 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| ||||| |||||||||| Sbjct 1844694 CATGAAATCAAAAGGATTTT 1844713 >seq3967 Length=4455950 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| || || || ||||| | |||| ||| || Sbjct 3642355 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 3642296 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| || Sbjct 3642295 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 3642237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430928529354912