Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1179 163 4e-35 seq113 107 3e-18 >seq1179 Length=1708556 Score = 163 bits (180), Expect = 4e-35 Identities = 227/317 (72%), Gaps = 1/317 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 1545968 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1545909 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| || |||||||| |||||| Sbjct 1545908 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCCGGGG 1545849 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| ||| |||| || ||||| || || || || || || | ||| | || Sbjct 1545848 AACAGATTGTGTTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 1545789 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| ||||||||||| || || |||||||| || | | || | ||||| ||||| Sbjct 1545788 TCTCGCCGAAGATGGCACCTGGGCGCGGCTTTTCTACGAGCAGGCCTGGGTACAGCTCCA 1545729 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || ||||||||||| || | ||||| || || ||||| ||||||||||| Sbjct 1545728 TAGCATCAATGTCTCCGTACAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1545669 Query 8978 TTATTAATAAAAATAAA 8994 ||||| || | || ||| Sbjct 1545668 TTATTGATGAGAACAAA 1545652 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 |||||||| || || || ||||| || || ||| ||| || ||||| || |||||||| Sbjct 1543943 ATGAGTCGGGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCCGTTTCAGG 1543884 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 |||||||| || | |||||||||||| ||||| || || || |||||||| || || || Sbjct 1543883 ACATCGCAGACCCGGTTGTGTTCCCTCAGCCATATTGTCGCATACATCATCAGGCCTGGG 1543824 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || ||||| | | ||| | |||||| || | || || Sbjct 1543823 ACCAAACCGAACACCTCCTGCCCGACGGAAAACTGCAAGTGTTCGGGGACGTGAGGCGGG 1543764 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || || || ||| Sbjct 1543763 TAGATCATCTCTGCCTGCGTGTCCTTCACCGTCGGCGGATACATTTCTCCATCGATCATC 1543704 Query 9862 TG 9863 || Sbjct 1543703 TG 1543702 >seq113 Length=243954 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||||||||| |||||||||||||| | |||| Sbjct 191373 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGG 191432 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || || ||||| ||||| || | ||| | |||| Sbjct 191433 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGAGAAAAAGGAGCTCCAATCTCCACCATGC 191492 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || || ||||||| Sbjct 191493 TTTCCCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCACATAAAACTCCA 191552 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 191553 GAGCATCAATGTCTCCATACAG 191574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708433967120640