Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1183 123 4e-24 seq1165 123 4e-24 >seq1183 Length=55391 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 24105 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 24164 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 24165 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 24224 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || || ||||| Sbjct 24225 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACCGA 24284 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 24285 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 24344 Query 16672 CCG 16674 || Sbjct 24345 ACG 24347 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 25849 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 25790 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 25789 CCGCCGCCTGGCTCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 25730 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || || ||||| Sbjct 25729 GCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACCGA 25670 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 25669 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 25610 Query 16672 CCG 16674 || Sbjct 25609 ACG 25607 >seq1165 Length=19941 Score = 123 bits (136), Expect = 4e-24 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| || |||||||| || || || Sbjct 5753 CGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGCGGC 5694 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| || | || ||||| ||||||| Sbjct 5693 GTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACGCGCGGCGTGCTGAAGGTCTTCCTG 5634 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || || ||||||||||| || | ||||| ||||| Sbjct 5633 GAGAACGTGATCCGCGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACGGTCACG 5574 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| | |||||||| | || || || || || Sbjct 5573 GCCATGGACGTGGTCTATGCCCTCAAGCGCCAGGGACG 5536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065822867408