Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1485 105 6e-18 seq6983 96.9 3e-15 seq1085 96.9 3e-15 seq1171 91.5 1e-13 >seq1485 Length=5998752 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| |||||||| || |||||||| ||| | Sbjct 4921873 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4921814 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 4921813 AAGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 4921754 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 4921753 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 4921694 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 4921693 TCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATG 4921646 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| || || | ||| |||||||| || |||||||| ||| Sbjct 4921646 GCCACCCCTCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 4921587 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || | ||||||||||| || |||| | | |||||| || || || Sbjct 4921586 CAAGGTGCGACCATCTCCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 4921527 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 4921526 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAAC 4921467 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 4921466 CTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATG 4921418 >seq6983 Length=297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| ||||| ||||||||||| ||||| || |||||||| || |||| |||||| | | Sbjct 184 CACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAG 125 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA 145798 || ||||||||||||||||| ||| |||||| ||| | || | |||| Sbjct 124 TCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTGAGATTCAATGATA 74 >seq1085 Length=356034 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| ||||| ||||||||||| ||||| || |||||||| || |||| |||||| | | Sbjct 330271 CACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAG 330330 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA 145798 || ||||||||||||||||| ||| |||||| ||| | || | |||| Sbjct 330331 TCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTGAGATTCAATGATA 330381 >seq1171 Length=1699523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | || | ||| |||||||| || |||||||| || Sbjct 311342 AGCCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 311283 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | |||||| || || ||||||||||| || |||| | | |||||| || || | Sbjct 311282 AGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGG 311223 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| || || ||| | | ||| | || || ||| ||| | Sbjct 311222 GAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 311163 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 311162 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 311113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471952287959040