Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1485 96.9 3e-15 seq1171 86.0 5e-12 >seq1485 Length=5998752 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| || | |||||| ||||||||||| || ||||||| Sbjct 4921879 CAGTTACCACCCCTC--AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGT 4921822 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| || ||| | || |||| || ||||| ||| | || |||| ||| || | Sbjct 4921821 AGTCGGACAAGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 4921762 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| || ||||| || || || ||| || | | | ||||| | Sbjct 4921761 CAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACT 4921704 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| |||| ||||||||| || || |||| || || ||||| |||||||| Sbjct 4921703 GGGCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 4921647 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| | || Sbjct 4921631 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATC 4921572 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 4921571 TCCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4921512 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| |||| ||||||| Sbjct 4921511 CTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 4921454 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || |||| || || ||||| |||||||| Sbjct 4921453 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 4921419 >seq1171 Length=1699523 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| | | ||| | || |||| || Sbjct 311316 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGC 311257 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || |||| ||| || || || | ||| || ||||| ||| | Sbjct 311256 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTG 311197 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | |||||| || | ||||||||| || || ||| Sbjct 311196 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 311137 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| |||||||| ||| Sbjct 311136 AGGGTCTTCACAAAGATCTGCATGTTG 311110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405037366025440