Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1179 152 7e-32 seq113 102 1e-16 >seq1179 Length=1708556 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || || ||||| |||| |||||| ||| |||| ||||| || || |||| || Sbjct 1543943 ATGAGTCGGGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCCGTTTCAGG 1543884 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||||||||||| ||||||||| ||||||||||| || || |||||||| | || || Sbjct 1543883 ACATCGCAGACCCGGTTGTGTTCCCTCAGCCATATTGTCGCATACATCATCAGGCCTGGG 1543824 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||| ||||| || | ||| || | ||| ||| | ||||| || | |||| Sbjct 1543823 ACCAAACCGAACACCTCCTGCCCGACGGAAAACTGCAAGTGTTCGGGGACGTGAGGCGGG 1543764 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || || || | | Sbjct 1543763 TAGATCATCTCTGCCTGCGTGTCCTTCACCGTCGGCGGATACATTTCTCCATCGATCATC 1543704 Query 9967 TG 9968 || Sbjct 1543703 TG 1543702 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 1545968 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1545909 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| |||||| Sbjct 1545908 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCCGGGG 1545849 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 | ||||| ||| |||| || ||||||| || || || || || | ||| | || Sbjct 1545848 AACAGATTGTGTTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 1545789 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| |||||||||||||| || ||||| ||||| |||| | ||| | ||| || || | Sbjct 1545788 TCTCGCCGAAGATGGCACCTGGGCGCGGCTTTTCTACGAGCAGGCCTGGGTACAGCTCCA 1545729 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| || || || |||||| || || || || || || || ||| Sbjct 1545728 TAGCATCAATGTCTCCGTACAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 1545673 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | |||| ||| | || Sbjct 1545151 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAAGGTG 1545092 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| ||||||| |||||||||||||| || || ||||||||| Sbjct 1545091 TCAGGCAGCAGTGGGTGCCAGTGGTAGAGCGTATTGAACTCGGCTGCAATGCGGTTCTGG 1545032 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 1545031 TACTGAAATCGCTGGT--TGAACAGCAGCTCGGGATCAAACTTGAGTTTGAAGTGGTAGC 1544974 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| | || || ||||| Sbjct 1544973 CGCTCAAGTGTTGCACATA 1544955 >seq113 Length=243954 Score = 102 bits (112), Expect = 1e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||| ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 191399 CCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 191458 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||||| ||||| || | ||| | ||||| || || || || || ||| | Sbjct 191459 TTCAGAGAAAAAGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGG 191518 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 191519 GGTTTCTCAAGCAGCAAGCCCACATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 191578 Query 9146 TCCAACTCGGCAGC--TATCTCCTTCTC 9171 |||| ||| || || | ||| |||||| Sbjct 191579 TCCAGCTCTGCCGCCTTCTCTTCTTCTC 191606 Score = 89.7 bits (98), Expect = 7e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 193542 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 193599 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || ||||||| ||| |||||| ||||||| |||||||| | || || | Sbjct 193600 CGAAGGAGTCAGGCATCAGCCCGTGCCAGTGGTAGAGCTGGTTGAACTCCACTGCGATGC 193659 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || | || || ||||| | ||| ||||| || | || || | Sbjct 193660 GATTCCGGTACTGGAACGGTGTCCCAAACAGCAGCTCGGGGTCGAACTTGAGGCTGAGGA 193719 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| |||||||| || | | || | || |||||||| ||||| Sbjct 193720 AGTACCCGCTGAGGTGCTGGACGTAGTCTTCAATGACGATCTTAATGGTCTCCCC 193774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723635218070400