Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1485 122 1e-22 seq1171 113 5e-20 >seq1485 Length=5998752 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| ||||||| || |||||| ||||| ||||||||||| | ||||| | Sbjct 4921861 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA 4921802 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | |||||| || | || | || |||||| Sbjct 4921801 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 4921742 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | || || |||| |||||| Sbjct 4921741 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 4921682 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||| || || |||||||| ||||| Sbjct 4921681 GTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 4921647 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | |||| ||||| |||| || |||||| ||||| |||||||||| Sbjct 4921647 TGCCACCCCTCAGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 4921588 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| | || | ||||||||||| || || |||| | |||||| || | | Sbjct 4921587 ACAAGGTGCGACCATCTCCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 4921528 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| || | || | Sbjct 4921527 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAA 4921468 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| || || |||| || || |||||||| ||||| Sbjct 4921467 CCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 4921419 >seq1171 Length=1699523 Score = 113 bits (124), Expect = 5e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||| || || | || |||||| ||||| |||||||| || Sbjct 311341 GCCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 311282 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| | || || ||||||||||| || || |||| | |||||| || | || Sbjct 311281 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 311222 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| ||||| ||| | || | | ||||| || | || || Sbjct 311221 AATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 311162 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 || | |||||||| ||||| ||||| || || |||||||| ||||| ||| || Sbjct 311161 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAAC 311107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565165936437120