Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1171 116 4e-21 seq1485 114 1e-20 seq3967 87.8 2e-12 seq2660 84.2 2e-11 >seq1171 Length=1699523 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 311111 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 311170 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || || | ||||| || || |||||| | || Sbjct 311171 AGTGACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGAT 311230 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 311231 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTAC 311290 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||||| ||||| | || || || | |||||||| |||| || ||| || Sbjct 311291 AACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGCTGC 311344 >seq1485 Length=5998752 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 4921419 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 4921478 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | || || Sbjct 4921479 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4921538 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||||| || | |||||| | |||||||||| Sbjct 4921539 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGGAGATGGTCGCACCTTGTCCGACTACAAC 4921598 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| ||||||||||| |||| || ||| Sbjct 4921599 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGC 4921646 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 4921647 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGAGCCCAGT 4921706 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | || || Sbjct 4921707 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4921766 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||| | |||||||||| Sbjct 4921767 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCTTGTCCGACTACAAC 4921826 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || |||||| | |||||||| |||| || || Sbjct 4921827 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 4921873 >seq3967 Length=4455950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||| ||||| ||||| || ||||| ||| Sbjct 3639388 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCCGCGAAGAAGGCGAGGACGTGAGAAATG 3639329 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||| | | |||| | |||||||| || |||| ||||| ||||||||| Sbjct 3639328 AAGTACTTCTCCTCGGGCTTCAGGGACTCCCAGTGCCGGATGTCTTTGGAAAGGTCCACC 3639269 Query 133399 T 133399 | Sbjct 3639268 T 3639268 >seq2660 Length=4220986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 1849694 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1849753 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 1849754 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 1849813 Query 133037 CCACCA 133042 | |||| Sbjct 1849814 CAACCA 1849819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500108677847040