Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4161 260 2e-64 seq4057 192 7e-44 seq334 93.3 5e-14 >seq4161 Length=467133 Score = 260 bits (288), Expect = 2e-64 Identities = 1036/1607 (64%), Gaps = 50/1607 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| || || || || || | Sbjct 256157 TTCATCCTCCGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCGATATCATCCTT-GC 256215 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 256216 TAAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 256275 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || || |||| |||||||| ||||| | || || | || | ||| || || Sbjct 256276 CGGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACTTCAATCTGGGGG- 256334 Query 6747 TACCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 || || ||| ||| | || || ||||||| ||||| | || || || |||| || Sbjct 256335 -ACTCCACGGGGCGCTGGCGGGATGCCCGTTAGGTCAAACTTCCCCAGCAAGTTGTTGTC 256393 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | ||| | | | || || || || || | | || | || || || Sbjct 256394 CTTCGTCATGGCCCTCTCGCCCTCGTACACCTGGACCAGGACGCTACTCTGGTTGTCCGA 256453 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | |||| | || || || | ||||| || || || | | || | | Sbjct 256454 GTAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGC 256513 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| | ||||| || |||| || || |||||||| || || |||| || | Sbjct 256514 GGTCATCACTCCACCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAG 256573 Query 6985 CAGGTCTTGAACAGATTCGTTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCG 7040 ||| || || ||| ||| ||| ||| | ||| | | ||| || ||||| || | | Sbjct 256574 CAGATCCTGCACA--TTC--TCCGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAG 256629 Query 7041 CCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAAT 7100 | ||||| || || |||||||||||||| || | || || || ||||| || || || Sbjct 256630 CGCCGTAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGA 256689 Query 7101 AATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTT 7160 | ||| || || | ||| || || ||||| || || || ||||| |||| || || | Sbjct 256690 AGTCCTGTAGCAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACTATCT 256749 Query 7161 CATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 | | | | || || | ||| | || || || | || || || || |||| Sbjct 256750 CCTGGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAAGG 256809 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 |||||| | || | || |||||||| || ||||| |||||||| || |||| Sbjct 256810 TGCCACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGA 256869 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TA 7337 | |||| || ||||| | || ||||| |||||| | | |||| || ||||| | Sbjct 256870 AGTCAATACCCTCGTAGAGGGAGTCAATCTCAATGCTAGCTTGT---GTGGAAGAGCTGA 256926 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || ||||| || | |||||| ||||| || | || | | || ||| ||| || | Sbjct 256927 GGGTGCGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACTGCTCGCTTGTTGCCAG 256986 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCG 7454 ||| || ||| || ||||| || || |||| || | || || | | | | | Sbjct 256987 CAATGTCGCGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT-- 257044 Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 || || || || ||||||| || || || || || || | || || |||||||| | Sbjct 257045 -GTCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTC 257103 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | | |||||| | | | || ||||| || || || || |||| |||||| ||||||| Sbjct 257104 CATCCTCAATGGTGAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATGAGTA 257163 Query 7575 CGTTCGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 | ||| | || | | | ||||| || | || || || ||||| || || | Sbjct 257164 CATTCTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAAGCTATAGCAGCTGCTG 257223 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 | || || || |||||||| | ||| || |||| ||||| | || ||||| || | Sbjct 257224 TGGGCTCGTTGATAATACGCATCACGTTAAGCCCAGTGATAGTGCCGGCGTCTTTGGTGG 257283 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || || || || || || ||||| ||||| || || | ||| |||| | ||||| Sbjct 257284 CCTGACGCTGGGAGTCATTGAAGTAAGCCGGCACTGTGATGACAGCGTTCTGCACTTTGC 257343 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 || ||||| | || || || || ||||| |||||||| ||||| || ||||| | Sbjct 257344 GCCCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCT 257403 Query 7809 CAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCA 7867 | | | | | || ||| | ||||| || | || || | | | |||| || || Sbjct 257404 CCG-GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTT----GC- 257457 Query 7868 GCACCGGGGATAACC---TTATACGACCAATCTTTCATATCGTCTTGGACCTGT-TGGTC 7923 |||| | | ||| | | ||| | ||||| ||| | || | |||| |||| Sbjct 257458 -CACCCTCGTTCACCACGCGGAAGGGCCAGTGCTTCATGTCGGCCTGCA-CTGTGGGGTC 257515 Query 7924 CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 |||| | ||||| || ||||| ||||| || | ||||| | |||||||| || Sbjct 257516 ATCGTACTTGCGGCCGATGAGGCGCTTGGCATCGAAGATGGTGTTGGTAGGGTTCATCGC 257575 Query 7984 TGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTA 8043 |||||||| || ||||| || || || || || | || || || || ||||| Sbjct 257576 CACCTGGTTCTTGGCAGCGTCGCCAATGAGGCGCTC---GGTGTCGGTGAAGGCCACGTA 257632 Query 8044 CGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCC 8102 | |||| || || || || || |||||||| || || || || || | | | || Sbjct 257633 -GCTGGGCGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGA 257691 Query 8103 AGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 |||| || ||||| || ||||| || || | || || ||||| ||| Sbjct 257692 AGACCCCCACGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGCT 257738 >seq4057 Length=3170749 Score = 192 bits (212), Expect = 7e-44 Identities = 370/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| ||||| || | || ||||| ||||| ||||| || Sbjct 1159555 GCACCATAAGCCACAGCTTCATCAGGGTTGATGCTCTTGTTCAGCTCTTTCCCGTTGAAG 1159496 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 1159495 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGATG 1159436 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| || | || | || || || | || || ||||| |||| Sbjct 1159435 TCATGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGG 1159376 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| ||| || ||||| || || | ||| |||||||| ||| Sbjct 1159375 GTGCCACGGAACAGGTCGGCGTTCAGCTCTTCAAAGCGAGCTCTGGTGATGGATGTGTAG 1159316 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | | || || | Sbjct 1159315 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGACGACAGA 1159256 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||||| || ||| ||| | Sbjct 1159255 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCGCTTGTTCTCACTG 1159196 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || ||||| || || || || || || || | ||||| || || | | | | Sbjct 1159195 ATGTCTTTTTTGTGCTTGCGCTTGAATTCAGCTATGAAGTGGTTGACCATGCGGTT---G 1159139 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1159138 TCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1159079 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || || Sbjct 1159078 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCGCCAAGGTCAAAGATAAGCACA 1159019 Query 7577 TTC 7579 ||| Sbjct 1159018 TTC 1159016 >seq334 Length=456351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT---TGGTTC 7993 ||||| || ||||| |||||||| || ||||| | ||||| || || |||||| Sbjct 208233 CCGATGAGCCGCTTGGCATCAAACACGGTGTTCTCAGGGTT---GGACGTGAGCTGGTTC 208289 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || ||||||||||| | || ||| | ||| ||||| ||||| || || || Sbjct 208290 TTGGCGGCGTCCCCGATCAAGCGCTCACCCTCGGGCGTGAACGCCACGTAGGACGGCGTG 208349 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 | || ||||| |||||||| || || ||||| ||||| |||| | ||||||| ||| Sbjct 208350 ATGCGGTTCCCCTGGTCGTTGGCGATGATTTCCACGCGACCGTTCTTGAAGACGCCCACG 208409 Query 8114 C 8114 | Sbjct 208410 C 208410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635051375975040