Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6983 91.5 2e-13 seq1085 91.5 2e-13 seq3967 89.7 6e-13 seq2660 82.4 9e-11 >seq6983 Length=297 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||| | ||||||||||||| |||| | || || ||||| Sbjct 218 CTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 159 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| || || ||||| |||||| | || |||||||||||||| ||||| || Sbjct 158 CAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCC 99 Query 106612 CGTCTCCGTCTGTGA 106626 ||||||||||| || Sbjct 98 GGTCTCCGTCTGAGA 84 >seq1085 Length=356034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||| | ||||||||||||| |||| | || || ||||| Sbjct 330237 CTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 330296 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| || || ||||| |||||| | || |||||||||||||| ||||| || Sbjct 330297 CAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCC 330356 Query 106612 CGTCTCCGTCTGTGA 106626 ||||||||||| || Sbjct 330357 GGTCTCCGTCTGAGA 330371 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 105907 AAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTC 105966 ||||||||||| |||| ||| | | |||||||| | |||||||| |||| | |||| Sbjct 323664 AAACTCTCCCGAGAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATGGATTC 323723 Query 105967 ATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 106026 ||||| |||| ||| || || || || || ||||||||||| | | | ||| ||||| Sbjct 323724 GTTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAGAGGAGAAGGCTGTT 323783 >seq3967 Length=4455950 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || ||||||||||||||||| ||||||||||| || || ||||||||||| Sbjct 3643637 ATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTCCCTTCTAGAGAGATGTTTTCCAT 3643578 Query 117045 AAAGTCAAATGGATTCTTCGCGTT 117068 |||||||| ||||||| ||| || Sbjct 3643577 GAAGTCAAAAGGATTCTCCGCTTT 3643554 >seq2660 Length=4220986 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 1849694 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1849753 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 1849754 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 1849812 Query 117412 GCAA 117415 |||| Sbjct 1849813 GCAA 1849816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589905164461440