Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1171 131 4e-25 seq1485 122 2e-22 >seq1171 Length=1699523 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | |||||||| Sbjct 311322 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCC 311263 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||| ||||| ||| Sbjct 311262 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 311203 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || |||||||| | ||| Sbjct 311202 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 311146 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 311145 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 311114 >seq1485 Length=5998752 Score = 122 bits (134), Expect = 2e-22 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| || || |||||||| || || || ||||| |||| |||| || | |||||||| Sbjct 4921855 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTC 4921797 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 4921796 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 4921737 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || |||||| ||||| |||||||| ||| || || || ||||| | || Sbjct 4921736 GATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGT 4921680 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || || || | ||||| Sbjct 4921679 CTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 4921647 Score = 113 bits (124), Expect = 1e-19 Identities = 152/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || |||||||| || || || ||||| |||| |||| || | |||||| | |||| Sbjct 4921622 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTCCCAGCT 4921564 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| || | || || || || ||||||||||| ||||| || || | Sbjct 4921563 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCT 4921504 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | |||||| ||||| |||||||| ||| || || || ||||| | ||||| | Sbjct 4921503 TGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTCC 4921447 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || || || | ||||| Sbjct 4921446 CAGTCAAGGTCTTCACAAAGATCTGCAT 4921419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109335808570352