Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1272 107 2e-18 seq2019 87.8 1e-12 >seq1272 Length=4713585 Score = 107 bits (118), Expect = 2e-18 Identities = 139/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||| ||||| || || || ||||||| || Sbjct 806295 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCATTGGAAACCATAAACTGGTCCCAAATC 806236 Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || ||| |||| ||| ||| ||| |||| || || | || || || || | Sbjct 806235 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 806177 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || || || | ||||||||||||| ||||| || || || || || | Sbjct 806176 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 806119 Query 30329 ACAGCAG 30335 |||| || Sbjct 806118 ACAGAAG 806112 >seq2019 Length=244905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 141036 TTGAGCTCCCTGCTGAGTACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 141095 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| | |||||||||| | ||||| || ||| Sbjct 141096 ATGGAGAACCAGGTTTTTTTGCCCATTATCAGTGCATTCTGTTTACCT 141143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408566524843088