Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6983 102 2e-16 seq1085 102 2e-16 >seq6983 Length=297 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||||| | || |||||||| ||||||||||| ||||||||| Sbjct 220 ACCTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 161 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | ||||| ||| || ||| || ||| ||||||||||| | || | Sbjct 160 CCCAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTG 101 Query 221852 CCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 100 CCGGTCTCCGTCTGAG 85 >seq1085 Length=356034 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||||| | || |||||||| ||||||||||| ||||||||| Sbjct 330235 ACCTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTC 330294 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | ||||| ||| || ||| || ||| ||||||||||| | || | Sbjct 330295 CCCAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTG 330354 Query 221852 CCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 330355 CCGGTCTCCGTCTGAG 330370 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || || ||||| || || || || || Sbjct 333075 CTGGTTGGTTTCAACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTC 333134 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| || || |||| ||| | | || | ||||||||| ||||| Sbjct 333135 TCTGGCTCGCTGCTCTTCTTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTC 333194 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| || |||| || Sbjct 333195 CAAATGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 333238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928725722096640