Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq3164 232 8e-56 seq10248 125 8e-24 >seq3164 Length=4070944 Score = 232 bits (256), Expect = 8e-56 Identities = 651/991 (66%), Gaps = 9/991 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || ||||||||| ||| || | Sbjct 3129450 TGTGTCGCAAATACTCTTCCAAACATTTTACTGCAAAAGGGTCAACGTCAGTGTCAAACT 3129391 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | ||| ||||||| || |||||| ||| || | Sbjct 3129390 TATTAGCAAAGAAGTGGTG---GTTTTTTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 3129334 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || | || |||| || ||||| | || ||||| | || | Sbjct 3129333 CACAGACAGAGCGAACATGAATTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATAT 3129274 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 3129273 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 3129214 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 3129213 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 3129155 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCT 160402 |||| || || |||||||| ||||| || | ||| || ||||||| || | ||| | Sbjct 3129154 AGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACT-TCAGTATTTTGCG 3129096 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 | | ||| || | |||||| || ||||| || || || || || || Sbjct 3129095 GCTTTCTAATACGAATTCTACAAATCTTCTGGTAACTACAAAATAGGCACTACCAGAAAA 3129036 Query 160463 TATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || || | | ||| ||| | |||||| || ||||| | || | Sbjct 3129035 AATTGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATGCCCGTGTTCTTTATTTTACCATC 3128976 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | | |||| | ||||||||||| | || ||||| ||| || || Sbjct 3128975 AATAATCTCGTGGTGTTTCTTCCACCTTGCTTCTTTAAAAACAGGCATTTTTTCTGTTTC 3128916 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 3128915 CAAGCTGTTTTCACCTTTAAGTGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTAAT 3128856 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 3128855 AGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTGGAACTTCTTCTGTAGAG 3128796 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || |||| Sbjct 3128795 ATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTC 3128736 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | |||| | |||||| || || ||||| || || |||||| ||| | ||| || Sbjct 3128735 TAACTGGCTGGAAATAAAGACATTGTCAAAACATGAGACTATTCCCTTCACAG-CAGCAA 3128677 Query 160823 GAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGA 160881 || | || | | |||| ||| || || | ||| || | |||||||| || |||| Sbjct 3128676 AAAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGA 3128617 Query 160882 TGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTA 160941 | || || | ||| || | |||||| || || |||| | ||| || ||||| || | Sbjct 3128616 CTGATCTTAGAAGCCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAA 3128557 Query 160942 TCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAA 161001 | ||||| || | || || || || | | | | ||| || | |||||| | | Sbjct 3128556 TTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTGGTCTTGGTGA 3128497 Query 161002 AATAATCACAATCCCGCGTCATGTTGATATA 161032 | | ||||||| |||||||| ||||| Sbjct 3128496 AGGAGGCACAATCTGCTGTCATGTTAATATA 3128466 >seq10248 Length=2452803 Score = 125 bits (138), Expect = 8e-24 Identities = 553/860 (64%), Gaps = 43/860 (5%) Strand=Plus/Minus Query 160130 CTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCC 160189 ||| || |||||| ||||||| || |||| | | |||||||| || |||| ||| Sbjct 41576 CTGGAGCATCCAGGGCACGTCGCCCACCCCGTAGATGCAGACGGCGCGCTGGTGCCGGCC 41517 Query 160190 GTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCAC 160249 | |||| |||||||| | || || || |||||| || ||| ||| || || Sbjct 41516 GGTGCAGGGCGGGTAGGGCGCACCCTTGCTGGTGTCACCCTCCAGGTATGCCCATTTGAC 41457 Query 160250 AAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACC 160309 | | || | || | ||| || ||| | | |||||| || |||| | ||| || Sbjct 41456 CAGGCGGGGCAGGGCGTTCATATCCGAGAGCTGGAATTTGTCGTTCTGGGGCATGGCGCC 41397 Query 160310 GGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTC 160369 || ||||| ||||| || | ||||||||||| | ||| ||||| |||||||| ||||| Sbjct 41396 CGGCACGCCAGGCATGCGGTTGAGGGTGGCCCAGACGTGCTCGTCAGGGCTGTAGGTGTC 41337 Query 160370 CTTAGACCATTCCATGAACT-CTCCGATTAACCTG----TCCCGCAGAACGTGAGTAACG 160424 ||| ||||| || | ||||| || || | || || | || | ||| ||| Sbjct 41336 CTTGGACCACTCGAGGAACTGCTGCG----CCATGGGGTTCTTGAAG-ATGTGCTGCACG 41282 Query 160425 TAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG-----TATGGGTATAG 160479 ||| || || || || | ||| ||| |||| | ||| || || | |||| | Sbjct 41281 AAGGCTCGCGTGACCACGATGTATGCGTTGCCCGTGAACATGGGAGAGTTGTGGG--GTG 41224 Query 160480 GCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCG 160537 ||||| || ||||||| ||| |||| || || ||| ||| |||| | Sbjct 41223 GCGGCAGTTTCTTTGTGGCTGTCCGGAAGATGA-AC-------TTCCCCACTTCGTGGTG 41172 Query 160538 CTTCTTCCACCTGACCATCTTG--TGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCA 160595 | | ||| | || |||| || | || | | || | ||| | |||||| Sbjct 41171 GTACCGCCAGCGCTCCTGCTTGATGGCTGAGGGCTTC--TCTGACTCCATGCTGTTGCGC 41114 Query 160596 CCGTCGAGCGATTTCAGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654 || | ||| ||||| || | || ||||| || ||||||| || || ||||| Sbjct 41113 CCCTGCAGCACCTTCAG-GGCACGTACAATCTCAGCATTGGTCTTGATGGGGAAATCGGT 41055 Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCCTCAT 160711 || || ||| | | ||| | |||| | | |||| | ||||||| ||| Sbjct 41054 GCCACAGGTGTTGAGGATGTAGTGCCATGGCACGGGGCTC---TGCAACAGGTCCTGCAT 40998 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||||| ||| |||||| ||||| ||||| | || || || Sbjct 40997 GCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTAGACTACCTCTTCCAGGCGGCT 40938 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAA--CATC 160829 ||||||||||| || || || | | ||| || ||| ||| ||| || | Sbjct 40937 AGCCACAAAGACATTGGGAAAGCAGGCTATGATGGCCCGCACAGCCTCCTGGAAGGCAGC 40878 Query 160830 TTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTG 160889 | | ||| | ||||||||| || || || | |||||| || || |||| | || Sbjct 40877 T--GGGGACTTCCTGTCCACGTGGACACAGTAGATGTTCTGGGGGGCATAGAGCGACCGC 40820 Query 160890 AGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAAC 160949 || | || |||||||||||| || || | ||||| || || |||||||| | || ||| Sbjct 40819 AGGAGCCGCTCGAACATCTCGATTTTGTCGTGGATGACCATGGAGTAGGCGACGGGGAAC 40760 Query 160950 TCGGTCTCCTCGCGACTCAG 160969 || | |||||| | ||||| Sbjct 40759 TCTGCCTCCTCCTGGCTCAG 40740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577145200498560