Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3411 228 1e-53 seq1183 228 1e-53 seq226 228 1e-53 seq1194 206 4e-47 >seq3411 Length=4652415 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 4643397 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4643456 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| | ||||||||| || | | ||| || ||||||||| | Sbjct 4643457 GCAGCAGCCGCACGGCCGGCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 4643516 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 4643517 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 4643576 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 4643577 TGATGCCCATGGCTTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 4643636 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 4643637 ACACGTAGATCGAGTA 4643652 >seq1183 Length=55391 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 25295 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 25236 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 25235 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 25176 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| || | ||||||||||| |||||||||| Sbjct 25175 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTCA 25116 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 25115 TGATGCTCATTGCCTTGGACGAGATGCCCGTGTCTGGGTGCACCTGCTTCAGCACCTTGT 25056 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 25055 ACACGTAGATCGAGTA 25040 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 17489 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 17548 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||| ||||||| || | | ||| || ||||||||| | Sbjct 17549 GCAGCAGCCGCACGGCCGTCCGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 17608 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||| |||| |||||||| | ||||||| || | ||||||||||| |||||||||| Sbjct 17609 GCGCCCGGCGCGCGGCCTCGCCGGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTCA 17668 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| ||| |||||||||||||| |||||||||| Sbjct 17669 TGATGCCCATGGCCTTAGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 17728 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 17729 ACACGTAGATCGAGTA 17744 Score = 217 bits (240), Expect = 2e-50 Identities = 202/256 (79%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 41175 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 41234 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| |||||| |||| || | || || ||||||||| | Sbjct 41235 GCAGCAGCCGCACGGCCGTCTGGGTCTCCCGCGAGC-GA-------GCGCTTGTTGTAGT 41286 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 41287 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 41346 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 41347 TGATGCCCATGGCTTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 41406 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 41407 ACACGTAGATCGAGTA 41422 >seq226 Length=43429 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 18580 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 18521 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 18520 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 18461 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 18460 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 18401 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 18400 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 18341 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 18340 ACACGTAGATCGAGTA 18325 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 27487 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 27428 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 27427 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 27368 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 27367 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 27308 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 27307 TGATGCCCATGGCCTTGGATGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 27248 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 27247 ACACGTAGATCGAGTA 27232 Score = 93.3 bits (102), Expect = 7e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| |||| ||||||||||| ||||||| ||||| ||| Sbjct 28504 TGTACTTGGTGACAGCCTTGGTGCCCTGGAAGACGGCGTGCTTGGCCAGCTCGCCTGGCA 28563 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCG 1485558 | ||| |||||||| ||||||| |||| Sbjct 28564 GCAGCAGCCGCACGGCCGTCTGGACCTCG 28592 Score = 93.3 bits (102), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 42858 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 42799 Query 1485530 TGATCAGGCGCACGGC 1485545 | ||| |||||||| Sbjct 42798 GCAGCAGCCGCACGGC 42783 >seq1194 Length=303801 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| | | Sbjct 262642 TGTACTTGGTGACGGCCTTGGTGCCCTCCGAGACGGCGTGCTTGGCCAGCTCGCCCGGAA 262701 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 262702 GCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 262761 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 262762 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 262821 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 262822 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 262881 Query 1485710 AAAC 1485713 | || Sbjct 262882 AGAC 262885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915155422502384