Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1485 125 7e-24 seq1171 120 3e-22 seq6983 89.7 5e-13 seq1085 89.7 5e-13 >seq1485 Length=5998752 Score = 125 bits (138), Expect = 7e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| ||| | || || |||| Sbjct 4921850 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTTCCAGCT 4921792 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| || || || |||||||||||||| ||||| Sbjct 4921791 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCT 4921732 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||| ||||||| || || | ||||| ||| || || | Sbjct 4921731 TGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCAG 4921672 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 4921671 TCAAGGTCTTCACAAAGATCTGCATG 4921646 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || ||| ||| | || | || Sbjct 4921624 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTCCCAG 4921566 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| |||||| || || || |||||||||||||| ||| Sbjct 4921565 CTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGAT 4921506 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| ||||||| || || | ||||| ||| || || Sbjct 4921505 CTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCC 4921446 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 4921445 AGTCAAGGTCTTCACAAAGATCTGCATG 4921418 >seq1171 Length=1699523 Score = 120 bits (132), Expect = 3e-22 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | ||| ||| | || || |||||||||| Sbjct 311311 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCA-TCTTCCAGCTGCTTGC 311253 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || || |||||||||||||| ||||| || Sbjct 311252 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCCT 311193 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 311192 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGG 311133 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 311132 TCTTCACAAAGATCTGCATG 311113 >seq6983 Length=297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | ||||| |||||||||||||| |||| ||||| |||||| Sbjct 202 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTG 143 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTT 148985 ||||| | |||||| | ||| ||||| ||||||||||| ||| || ||| ||| | | Sbjct 142 CTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTGAGAT 83 Query 148986 TC 148987 || Sbjct 82 TC 81 >seq1085 Length=356034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | ||||| |||||||||||||| |||| ||||| |||||| Sbjct 330253 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTGATTG 330312 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTT 148985 ||||| | |||||| | ||| ||||| ||||||||||| ||| || ||| ||| | | Sbjct 330313 CTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCCGGTCTCCGTCTGAGAT 330372 Query 148986 TC 148987 || Sbjct 330373 TC 330374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483358825453440