Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3164 150 2e-31 seq10250 143 3e-29 >seq3164 Length=4070944 Score = 150 bits (166), Expect = 2e-31 Identities = 569/883 (64%), Gaps = 21/883 (2%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || ||||| || || || | ||| || ||| || | ||||| || || || || Sbjct 3129397 TCAAACTTATTAGCAAAGAAGTGGTG---GTTTTTTAGCATCCAGTTCAGGTCTCCTACC 3129341 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || || || | || ||||| || || || | || || | | Sbjct 3129340 CCAAAAACACAGACAGAGCGAACATGAATTCCACTGCATGGTGGGTAGGGTGCACCTTTG 3129281 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 || ||| || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 3129280 GACATATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAA 3129221 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||| |||| || | || || || || || | || | |||||| | || Sbjct 3129220 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGT 3129162 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||||| || ||||| || || || || || | |||||| ||||||| | | Sbjct 3129161 TGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTCAGTAT 3129102 Query 162420 ----CGTTTTATCGTATA-GAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474 || || || ||| |||| | | | | ||||| || | ||| || || Sbjct 3129101 TTTGCGGCTT-TCTAATACGAATTCTACAAATCTT----CTGGTAACTACAAAATAGGCA 3129047 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 ||||||||||| | || | | | ||| || | | ||||||| |||||||| | Sbjct 3129046 CTACCAGAAAAAATTGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATGCCCGTGTTCTTT 3128987 Query 162535 ACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 | | || || | | | |||| ||| ||||||| || ||| || | Sbjct 3128986 ATTTTACCATCAATAATCTCGTGGTGTTTCTTCCACCTTGCTTCTTTAAAAACAGGCATT 3128927 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | ||| || || | ||||| ||| | || || | | || || || | Sbjct 3128926 TTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGTGCTTTTAATTTCTCTACTATTTCCTGG 3128867 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||||| |||||||| |||| ||||| || || | |||||||| || || Sbjct 3128866 TTGGTCTTAATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTGGAACTT 3128807 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 || ||| ||||| | | ||||| | || ||||| || | ||||| || || || Sbjct 3128806 CTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATAT 3128747 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||| ||| ||| | |||||||||||| ||||| || ||||| ||| || Sbjct 3128746 ACAACACTCTCTAACTGGCTGGAAATAAAGACATTGTCAAAACATGAGACTATTCCCTTC 3128687 Query 162835 ACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || | ||| | || | || || | || | || || || | |||||| | |||| Sbjct 3128686 ACAG-CAGCAAAAAAAGATTCTGG--AGACTTTTTGTCAACATGAATGCAGTAAAAATTC 3128630 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 |||||||| |||| | || || | || || | |||||| || || || | ||||| Sbjct 3128629 TGAGGGGCATAGACTGATCTTAGAAGCCTATCAAGCATCTCAATTTTGTGATAAACCACT 3128570 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || || ||||||| Sbjct 3128569 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGCTGAGAG 3128527 >seq10250 Length=2049278 Score = 143 bits (158), Expect = 3e-29 Identities = 399/605 (66%), Gaps = 9/605 (1%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || ||||||| |||| | || | |||| Sbjct 119895 GCCAGCTCTCTTGGGGAAAGAAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 119836 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 119835 TTCTCGTAGTTTTCTCTTGAAGGGCCCAGTACGACTGGTACTGATCCGGCCAGAAGAGCA 119776 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| || || || ||||| | || |||||| Sbjct 119775 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGACTGAATTTTCAAAGGAAAGGTAGAAT 119716 Query 177126 TTACAGGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 || || | || | | || || |||| | ||| | || ||||| | | | Sbjct 119715 TTGCAAGTGGAGATTGTTGGAATCAAGTTTTTATCATTGACGTAGTCTCCAAAGGCTTGT 119656 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTG 177244 ||||| ||| || || |||| ||| || ||||| ||| || || || ||| |||| Sbjct 119655 CCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCTAGCGTG 119597 Query 177245 GTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGATT 177304 || |||||| || || || ||||| || || || || ||| || || || Sbjct 119596 CTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC----TT 119541 Query 177305 CGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGT 177363 | | | | | | | | | || | | | | ||||| ||||| |||||||| || | Sbjct 119540 CAAATGTGAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCTGAAT 119481 Query 177364 CGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGCTG 177422 | || | ||| || | || || ||||| |||| ||| || || | ||| || | | Sbjct 119480 CACGCCGGTAAGTCAGGGTCAGGTTGAATAGGTGTTCAATGCCACTCTTTTGTGGAG-TA 119422 Query 177423 TTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTA 177482 | | |||| || || ||||||||||| ||||| || || || | ||| |||| || | | Sbjct 119421 TGAGTGGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTGCTGA 119362 Query 177483 GGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTG 177542 |||| | || |||| || || || ||||| |||| || || |||| || |||| Sbjct 119361 GGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACAGCATGGGATTTG 119302 Query 177543 TAATA 177547 | ||| Sbjct 119301 TTATA 119297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578357845017600