Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2779 118 3e-23 seq2455 118 3e-23 seq3515 113 1e-21 seq4069 100 9e-18 seq5342 84.2 7e-13 seq3022 84.2 7e-13 seq613 84.2 7e-13 >seq2779 Length=205872 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 140327 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 140268 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 140267 CCCGGGCTTCAGC 140255 >seq2455 Length=5700740 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 5058790 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 5058731 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 5058730 CCCGGGCTTCAGC 5058718 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 5042987 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 5043046 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 5043047 CCGGGCTTCAGC 5043058 >seq3515 Length=155587 Score = 113 bits (124), Expect = 1e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct 42227 ATGGCTCAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCTCTGGTTCA 42286 Query 2826 ACCCCGGGCTTCAGC 2840 ||||||| ||||||| Sbjct 42287 ACCCCGGACTTCAGC 42301 >seq4069 Length=4448170 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 3675771 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 3675712 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 3675711 CCCGGGTTTCGGC 3675699 >seq5342 Length=227 Score = 84.2 bits (92), Expect = 7e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 ||| |||||||||||| | ||||||||||||||| ||||||||||||| |||||||||| Sbjct 61 GGCAGAAGTAGCTCAGCTAGGAGAGCATTAGACTAAAGATCTAAAGGTTCCTGGTTCAA 3 >seq3022 Length=5583 Score = 84.2 bits (92), Expect = 7e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 ||| |||||||||||| | ||||||||||||||| ||||||||||||| |||||||||| Sbjct 1365 GGCAGAAGTAGCTCAGCTAGGAGAGCATTAGACTAAAGATCTAAAGGTTCCTGGTTCAA 1423 >seq613 Length=6423 Score = 84.2 bits (92), Expect = 7e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 ||| |||||||||||| | ||||||||||||||| ||||||||||||| |||||||||| Sbjct 3000 GGCAGAAGTAGCTCAGCTAGGAGAGCATTAGACTAAAGATCTAAAGGTTCCTGGTTCAA 3058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847822071120