Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq226 197 2e-44 seq3411 188 1e-41 seq1183 188 1e-41 seq1194 165 1e-34 >seq226 Length=43429 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 18340 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 18393 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 18394 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 18453 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| |||||||| Sbjct 18454 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 18513 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 18514 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 18562 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 27247 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCATCCAAGGCCATG 27300 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 27301 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 27360 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| |||||||| Sbjct 27361 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 27420 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 27421 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 27469 >seq3411 Length=4652415 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || ||| ||||| Sbjct 4643637 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAAGCCATG 4643584 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 4643583 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 4643524 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||| | |||||||| Sbjct 4643523 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGCCGGCCGTGCGG 4643464 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 4643463 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 4643415 >seq1183 Length=55391 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| | ||| Sbjct 25055 TACAAGGTGCTGAAGCAGGTGCACCCAGACAC-----GGGCATC-TCGTCCAAGGCAATG 25108 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | ||||||| ||| Sbjct 25109 AGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCGGCGAGGCCTCGCGC 25168 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| |||||||| Sbjct 25169 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 25228 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 25229 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 25277 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || ||| ||||| Sbjct 17729 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCTAAGGCCATG 17676 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | |||||||| ||| Sbjct 17675 GGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCGGCGAGGCCGCGCGC 17616 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 | ||||| || |||||||||| || ||| | |||| ||||||| ||| |||||||| Sbjct 17615 CGGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCGGACGGCCGTGCGG 17556 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 17555 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 17507 Score = 178 bits (196), Expect = 2e-38 Identities = 178/229 (78%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || ||| ||||| Sbjct 41407 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAAGCCATG 41354 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 41353 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 41294 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| | |||| |||| |||||| |||||||| Sbjct 41293 CTGGCGCACTACAACAAGCGC-------TCG-CTCGCGGGAGACCCAGACGGCCGTGCGG 41242 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 41241 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 41193 >seq1194 Length=303801 Score = 165 bits (182), Expect = 1e-34 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| || ||| |||| ||| |||| ||| Sbjct 262884 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACAC---TGG--CATC-TCCTCCAAGGCCA 262831 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| || ||| | Sbjct 262830 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGAGAAGCCTCCC 262771 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||| ||||| ||||||| Sbjct 262770 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATTCAGACAGCCGTGC 262711 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | ||||| ||||||| |||||||||||| |||||||||| Sbjct 262710 GCCTGCTGCTTCCGGGCGAGCTGGCCAAGCACGCCGTCTCGGAGGGCACCA 262660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176821989949472