Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6983 96.9 4e-15 seq1085 96.9 4e-15 seq3967 84.2 3e-11 seq2660 82.4 1e-10 >seq6983 Length=297 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||| | ||||||||||| | |||| | || || ||||| Sbjct 218 CTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 159 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| || || |||||| |||||| | || |||||||||||||| ||||| || Sbjct 158 CAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCC 99 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||||| |||| | ||||| | ||| Sbjct 98 GGTCTCCGTCTGAGATTCAATGATAGCGTACCA 66 >seq1085 Length=356034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||| | ||||||||||| | |||| | || || ||||| Sbjct 330237 CTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTCCC 330296 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| || || |||||| |||||| | || |||||||||||||| ||||| || Sbjct 330297 CAGGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGCGTGCC 330356 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||||| |||| | ||||| | ||| Sbjct 330357 GGTCTCCGTCTGAGATTCAATGATAGCGTACCA 330389 >seq3967 Length=4455950 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 122429 ||| || || || |||||||||||||| ||||||||||| || || ||||||||||| Sbjct 3643637 ATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTCCCTTCTAGAGAGATGTTTTCCAT 3643578 Query 122430 AAAGTCAAATGGATTCTTCGCGTT 122453 |||||||| ||||||| ||| || Sbjct 3643577 GAAGTCAAAAGGATTCTCCGCTTT 3643554 >seq2660 Length=4220986 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 1849694 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1849753 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 1849754 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 1849812 Query 122797 GCAA 122800 |||| Sbjct 1849813 GCAA 1849816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627951486297600