Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1171 82.4 5e-11 >seq1171 Length=1699523 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| ||| | ||||| ||| |||||| || ||||| || || || Sbjct 311341 GCCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 311282 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| || || || || Sbjct 311281 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGG 311222 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||||| | || || | ||| ||||| | ||| | Sbjct 311221 AATGCCTTCCTTGTCCTGAATCTTG-GCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 311163 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || | ||| || || || || || | || |||||||| ||||||||||||| Sbjct 311162 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGA 311109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314690260373648