Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1485 132 1e-25 seq1171 123 6e-23 seq102 107 5e-18 seq1357 98.7 2e-15 seq3329 86.0 1e-11 >seq1485 Length=5998752 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || ||||| || || |||| ||||| |||| ||| || | ||||| Sbjct 4921859 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATC 4921800 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 4921799 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4921740 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 4921739 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 4921680 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || ||||| || || Sbjct 4921679 CTTCCCAGTCAAGGTCTT 4921662 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| || || |||| ||||| |||| ||| || | ||||| Sbjct 4921631 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATC 4921572 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 | | |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 4921571 TCCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4921512 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 4921511 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 4921452 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || ||||| || || Sbjct 4921451 CTTCCCAGTCAAGGTCTT 4921434 >seq1171 Length=1699523 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||||||||| ||||| || || |||| ||||| || | | || | ||||| Sbjct 311326 CAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 311267 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || ||||| ||||||||||| Sbjct 311266 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 311207 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 311206 CTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 311147 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 311146 CTTGCCAGTCA 311136 >seq102 Length=1015 Score = 107 bits (118), Expect = 5e-18 Identities = 102/129 (79%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 639 TTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCC 580 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CG 7853 |||||| || |||||||||| | |||||| |||| | | ||||||||||| ||| | Sbjct 579 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGAATACTTATCA 520 Query 7854 CGTTAGCTT 7862 ||||||||| Sbjct 519 CGTTAGCTT 511 >seq1357 Length=1537368 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||||| || || || || || ||||| || || ||||| | || || Sbjct 29146 CCAAATTTATAACGTAATCGCCACTGCTCACGCTTTTGTAATAATCTTCTTCATAGTAAT 29205 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | ||||| || ||||||||||| ||||| || ||| | ||||| || || ||||| Sbjct 29206 ACCAATCATGATCGGAGGTTTCGGAAACTGATTAGTCCCTCTTATGATCGGAGCCCCTGA 29265 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || |||||| | | || || | ||| || ||| || |||| || ||||| Sbjct 29266 CATAGCATTTCCACGCATAAATAACACAAGCTTCTGACTATTACCCCCCTCCTT 29319 >seq3329 Length=2772 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||| ||||||||||||||| | | | Sbjct 649 TGGTAAGGTTCTTCGCGTTGCCTCGAATTAAACCGCATACTCCACCGCTTGTGCGGGCCC 590 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 |||||| || |||| ||||| | |||||| | || | |||||| ||| | ||| || Sbjct 589 CCGTCAATTCCTTTAAGTTTCACACTTGCGTGCATACTCCTCAGGCGGAGAACTTATTGC 530 Query 7855 GTTAGCT 7861 ||||||| Sbjct 529 GTTAGCT 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192374495437664