Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3967 107 2e-18 seq2660 107 2e-18 >seq3967 Length=4455950 Score = 107 bits (118), Expect = 2e-18 Identities = 105/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || ||||| |||||||| || | ||| |||||||| || Sbjct 3642364 ATTCATACCT-CATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCC 3642306 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 3642305 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 3642246 Query 4682 GGCAAACGCTACTA 4695 ||||| || |||| Sbjct 3642245 TGCAAAAGCCACTA 3642232 >seq2660 Length=4220986 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 1849696 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 1849755 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 1849756 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 1849815 Query 4692 AC 4693 || Sbjct 1849816 AC 1849817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||| ||||| || || ||||| ||||||||||| |||| || Sbjct 1854395 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTCGCTGCAAAAAATGCCAGAA 1854454 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| |||||||| | ||| || | || | || |||||||| || | || || | Sbjct 1854455 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAACTTGTTCCAGTGAGGAAGGTCCTTTG 1854514 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 1854515 ACAAATCAAC 1854524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426996220935248