Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1179 167 3e-36 seq113 96.9 5e-15 >seq1179 Length=1708556 Score = 167 bits (184), Expect = 3e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 |||||||| || || |||||||| ||||| ||| ||| || ||||| || ||||||| Sbjct 1543943 ATGAGTCGGGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCCGTTTCAGG 1543884 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 |||||||| |||| |||||||||||| ||||| || || || |||||||| || || || Sbjct 1543883 ACATCGCAGACCCGGTTGTGTTCCCTCAGCCATATTGTCGCATACATCATCAGGCCTGGG 1543824 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || ||||| | | ||| || |||||| || | || || Sbjct 1543823 ACCAAACCGAACACCTCCTGCCCGACGGAAAACTGCAAGTGTTCGGGGACGTGAGGCGGG 1543764 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || || |||||| Sbjct 1543763 TAGATCATCTCTGCCTGCGTGTCCTTCACCGTCGGCGGATACATTTCTCCATCGATCATC 1543704 Query 9484 TG 9485 || Sbjct 1543703 TG 1543702 Score = 156 bits (172), Expect = 6e-33 Identities = 220/308 (71%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 1545968 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1545909 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| |||||||||||| |||||| Sbjct 1545908 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCCGGGG 1545849 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | ||||| ||| |||| || ||||| || ||||| || || || | ||| | || Sbjct 1545848 AACAGATTGTGTTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATCG 1545789 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| ||||||||||| || || |||||||| || | | || | ||||||||||| Sbjct 1545788 TCTCGCCGAAGATGGCACCTGGGCGCGGCTTTTCTACGAGCAGGCCTGGGTACAGCTCCA 1545729 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | ||||||||| || | ||||| || || || || ||||||||||| Sbjct 1545728 TAGCATCAATGTCTCCGTACAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 1545669 Query 8588 TTATTAAT 8595 ||||| || Sbjct 1545668 TTATTGAT 1545661 >seq113 Length=243954 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||||||||| ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 191397 CTCCGCCGAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 191456 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || || || || ||||| || | ||| | ||||| || || || || | ||||| Sbjct 191457 CCTTCAGAGAAAAAGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 191516 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || || | ||||| ||| || | |||||| || || Sbjct 191517 GGGGTTTCTCAAGCAGCAAGCCCACATAAAACTCCAGAGCATCAATGTCTCCATACAGCT 191576 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || || || |||| | |||||||| Sbjct 191577 CTTCCAGCTCTGCCGCCTTCTCTTCTTCTCCTG 191609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716784896394240