Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1485 131 4e-25 seq1171 118 3e-21 >seq1485 Length=5998752 Score = 131 bits (144), Expect = 4e-25 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| ||||| || || ||| Sbjct 4921650 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 4921707 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| || || || || |||| Sbjct 4921708 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 4921767 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| |||||||| | || |||| |||| || ||| Sbjct 4921768 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCAC-CTTGTCCGACTACAAC 4921826 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||||||||| Sbjct 4921827 ATCCAGAAGGAGTCCACCCTGCATCTTGT 4921855 Score = 116 bits (128), Expect = 9e-21 Identities = 154/208 (74%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| ||||| || || ||| Sbjct 4921422 CAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 4921479 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| || || || || |||| Sbjct 4921480 ACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 4921539 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| | |||||| | || |||| |||| || ||| Sbjct 4921540 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGGAGATGGTCGCAC-CTTGTCCGACTACAAC 4921598 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 4921599 ATCCAGAAGGAGTCCACCCTGCA-CTTG 4921625 >seq1171 Length=1699523 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 311117 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 311174 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||||||||| ||||| || || || || |||| Sbjct 311175 ACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAGC 311234 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 311235 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAACA 311294 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 311295 TCCAGAAGGAGTCCACCCTCCACCTTGT 311322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203573023701664