Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthocomus_20hoazin_20[refseq_20GCF_5F000692075.1_202014-05-19] 10,256 sequences; 1,203,712,246 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1171 127 2e-24 seq1485 125 7e-24 >seq1171 Length=1699523 Score = 127 bits (140), Expect = 2e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || || || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 311331 AGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 311272 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 311271 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 311212 Query 41765 TTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| | || | ||||| | | ||||| || | ||| ||||| | || Sbjct 311211 TTGTCC-TGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 311153 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 311152 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 311111 >seq1485 Length=5998752 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| ||||||||| ||||| |||||||| | |||||| Sbjct 4921864 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGA 4921805 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 4921804 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 4921745 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||||| || Sbjct 4921744 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTG 4921685 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || || ||||||||| Sbjct 4921684 ATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATG 4921646 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||||| ||||| ||| ||||||||| ||||| |||||||| | |||||| Sbjct 4921636 AGGCGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGA 4921577 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || | ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 4921576 CCATCTCCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 4921517 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||||| || Sbjct 4921516 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTG 4921457 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| || || ||||||||| Sbjct 4921456 ATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATG 4921418 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| ||||||||| ||||| |||||||| | |||||| Sbjct 4922064 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGA 4922005 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCG 41739 | || || ||||||||||| || || ||||| || Sbjct 4922004 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCG 4921970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244732627200