Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 2e-13 seq2 89.7 5e-13 >seq3 Length=111636321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | ||||||||||||||| ||||| || || ||||| ||||| Sbjct 98372948 ATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGG 98372889 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || ||||| || | ||||||||||| Sbjct 98372888 AAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 98372851 >seq2 Length=150265477 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| ||||| || || ||||| || | ||||| Sbjct 130841012 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCTTC 130841071 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| ||||| |||||||| || ||||||||||| || || || || | ||||| || Sbjct 130841072 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 130841130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403692261000