Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq1 86.0 7e-12 >seq2 Length=150265477 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| | ||| | ||| | Sbjct 130841010 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 130841069 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 130841070 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 130841129 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 130841130 CAACCACTCTCTCACC 130841145 >seq1 Length=114059860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||| ||||| ||||||||||| ||||| || || | || || || |||| || || Sbjct 25232 CACTCGCTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTG 25291 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 25292 CTCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 25351 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | ||||||| Sbjct 25352 CTCCAGGTAGATGGCAAAAGCTCCAGG 25378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709168954000