Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq14 131 2e-25 seq7 100 3e-16 >seq14 Length=20466350 Score = 131 bits (144), Expect = 2e-25 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | ||||||||||||||||||||| | ||||||||||| Sbjct 6466692 GGGCACGCCGTCGGGGCCAATGAGGAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCG 6466633 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 6466632 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 6466573 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACC 83296 ||||| |||||| ||||| | |||||| || || | |||| ||||| ||| Sbjct 6466572 GAAGGGCAGCGCCTCTTTCAGGAAAGTGAAGAGGGGGTGCTCGTCCTT--CCCGTTCACC 6466515 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||||| | || || || |||| ||| ||||| |||||||| |||| || Sbjct 6466514 TCGCACTTCTCGAACATGATGAAATTTGGCTTGAACCCGTTGCCAGGACGAACGTACT 6466457 >seq7 Length=61875929 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 3929709 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGG--GGTA 3929652 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 3929651 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGAAG 3929593 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | || |||||||| || | || |||||||| || Sbjct 3929592 CCACATTCTCGATCAGGACCACGCGGCCCCGGAA 3929559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608784053317000