Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17 131 2e-25 seq3 129 6e-25 seq20 107 2e-18 seq30 84.2 2e-11 >seq17 Length=13820886 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || ||||| ||||||||| | || || || Sbjct 1693478 GAAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGC 1693537 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | | | |||||| || || | ||||| || |||||||| | | Sbjct 1693538 CCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTG 1693597 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| | || || | ||| || || |||||||| || | || ||||| |||| Sbjct 1693598 ATCAGCAGAGGCTGATTTTCGCTGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACT 1693657 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| || |||| ||||| || ||| ||||| || |||| || Sbjct 1693658 ACAACATCCAGAAAGAATCCACTCTGCACCTGGTGCTGCGCCTGCGGGGTGG 1693709 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || |||||||| ||||||||| | || ||||| ||| Sbjct 1693710 AATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1693769 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | || || || |||||||| | |||| Sbjct 1693770 TGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACC 1693828 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || || | || ||||| |||||||| || | || ||||| ||||||| Sbjct 1693829 AGCAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACA 1693888 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||||||| ||| ||||| | || || || Sbjct 1693889 ACATCCAGAAGGAATCTACTCTGCATCTTGTGCTGCGCCTCAGAGGAGG 1693937 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || ||||| | || || || ||| Sbjct 1693939 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTGGAGCCCAGT 1693998 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || || |||||||| | ||||| Sbjct 1693999 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1694057 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | || ||||| |||||||| Sbjct 1694058 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1694117 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| || || ||||| || |||| || Sbjct 1694118 CATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1694165 >seq3 Length=111636321 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||| ||||| || |||||||| || |||| ||| Sbjct 98372018 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 98372077 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 98372078 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 98372131 >seq20 Length=9871655 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 || || ||||| ||| | |||||||| | || |||| || || || |||||||| ||| Sbjct 6390939 AAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGAC 6390998 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 | |||||||||| ||||||||||||||||| ||| |||| || || || ||| ||||| Sbjct 6390999 GGGCGCACCCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTTCACCTGGTGCTGCGC 6391058 Query 40906 TTGAGGGGCGGC 40917 | ||||| ||| Sbjct 6391059 CTCAGGGGTGGC 6391070 >seq30 Length=5101010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| |||||| || |||||||| || | ||| Sbjct 3819371 GGGATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGC 3819312 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 3819311 ACCCTCGCAGACTACAACATCCAGAA 3819286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208412598000