Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 >seq11 Length=25106277 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 20/206 (10%) Strand=Plus/Plus Query 1930 AGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCT 1988 |||||||||||||| ||| | |||| | ||||||||||||||||| |||||||||||| Sbjct 21238141 AGGCCGCGGTCGGCAGGCTCAGCGCCGCTACCGCCGCGAAGAGTTCGTCTCTGTCAGCCT 21238200 Query 1989 CGGCGGCGCCCGGG-----AGATGCGgc-----------gcgcggccccgcgcccccagc 2032 |||||||| ||||| || |||| | || ||| | | ||||||| Sbjct 21238201 CGGCGGCGGCCGGGACCAAAGGGCCGGCCCGCCCACCCTGGGCAGCCGGGGGACCCCAGC 21238260 Query 2033 agagcaacacgggagcggcgcccccggg-gc--aacccccgcgccccccTGCGCCGTGGG 2089 ||||||| ||||| |||||||| ||||| || | | |||| | ||||| ||||| Sbjct 21238261 AGAGCAAAACGGGCGCGGCGCCGCCGGGCGCTGAGCAGCCGCCGCTCCCTGAAACGTGGA 21238320 Query 2090 GCGCGCGGACGGCGTCGCTCCCACAC 2115 | |||||| |||| ||| || |||| Sbjct 21238321 GTGCGCGGTGGGCGCCGCCCCGACAC 21238346 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 20/206 (10%) Strand=Plus/Minus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-cc 139561 |||| || ||| |||| |||||| | ||||| ||||| | |||| | | || || Sbjct 21238346 GTGTCGGGGCGGCGCCCACCGCGCACTCCACGTTTCAGGGAGCGGCGGCTGCTCAGCGCC 21238287 Query 139562 cgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgc-----------gc 139610 ||| |||||||| ||||| |||||||||||||| | | ||| || | || Sbjct 21238286 CGGCGGCGCCGCGCCCGTTTTGCTCTGCTGGGGTCCCCCGGCTGCCCAGGGTGGGCGGGC 21238227 Query 139611 CGCATCT-----CCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAAT 139665 || || ||||| |||||||||||||||||||| ||||||||||||||||| | Sbjct 21238226 CGGCCCTTTGGTCCCGGCCGCCGCCGAGGCTGACAGAGACGAACTCTTCGCGGCGGTAGC 21238167 Query 139666 GGCG-GGTGCCGGCCGACCGCGGCCT 139690 |||| | ||| |||||||||||||| Sbjct 21238166 GGCGCTGAGCCTGCCGACCGCGGCCT 21238141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569056885122000