Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq17 127 1e-24 >seq17 Length=13820886 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | |||||||||||| | ||| ||||||||| ||||||||||| || Sbjct 1693710 TCCACCCCGCAGGCGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGA 1693651 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| |||| | || |||| |||||| || |||||||| |||| |||||| || || Sbjct 1693650 CAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAGG 1693591 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | || | || | || | | || || Sbjct 1693590 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 1693531 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||| ||||||||||| Sbjct 1693530 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1693483 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| || || | |||| ||| ||||| ||||||||||| ||||| |||| | || Sbjct 1693923 CAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1693864 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || ||||| |||| ||||||||| || | || ||||| || Sbjct 1693863 TTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 1693804 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | ||||| || | |||||||| Sbjct 1693803 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 1693744 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 1693743 CTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1693711 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || ||||| | ||| || ||||| ||||||||||| ||| Sbjct 1694165 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAC 1694106 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||| ||||||||| || || || |||| ||||||||| || Sbjct 1694105 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1694046 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | || | | || || Sbjct 1694045 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACT 1693986 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| ||||| || ||||| || || || |||||||||||||||||| ||| Sbjct 1693985 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCCCTC 1693934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323065404788000