Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq12 232 7e-56 >seq12 Length=20202851 Score = 232 bits (256), Expect = 7e-56 Identities = 310/435 (71%), Gaps = 3/435 (1%) Strand=Plus/Minus Query 125079 GCCGCTCATGCCCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCC 125138 ||||||| ||||||| || ||| ||||||||||||||| || || ||||||||| Sbjct 8296168 GCCGCTC---CCCGCCCCGTCCCCGCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCC 8296112 Query 125139 CTGCTCTTCGGCCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACA 125198 |||| ||||||||||| |||||||| ||||||| || || ||||| || | || Sbjct 8296111 GCGCTCCTCGGCCAGGTAGGCGGCCAGGTGGGCGGCCAGGCAGCGCGGCCCGTCGCCGCA 8296052 Query 125199 GCCGTTTTCGTACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCG 125258 ||| ||| |||||| | ||||||| |||| ||| || | | |||||| || Sbjct 8296051 GCCCCGCTCGGCCAGCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCG 8295992 Query 125259 ACCCCAGTTGAAGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAA 125318 |||||||||| ||||| | | | || | | | |||| ||| |||| || Sbjct 8295991 GCCCCAGTTGAGGCCGCCGTCAGCCTCCAGCTGCGCCGCCACCCTTCCCAGCAGCGCGGC 8295932 Query 125319 CGCTGCCTGCGTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCG 125378 ||| || ||| || | | || | ||||||||||||||| |||||||||| ||| | Sbjct 8295931 CGCCTCCCGCGGCTCGGCCCGAGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTG 8295872 Query 125379 CCGCTCCAGCTCGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCC 125438 ||||||||||||||||||||| ||||| || || || || ||| || | Sbjct 8295871 CCGCTCCAGCTCGGCCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCGC 8295812 Query 125439 TTCCTTGCCGCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAG 125498 | ||||| || |||||||||||||||||||||||||| |||||| || |||||||| Sbjct 8295811 GGCGCCGCCGCCGCGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAG 8295752 Query 125499 GGAGTCAGCCATGGC 125513 ||| | |||||| Sbjct 8295751 AGAGCGCGGCATGGC 8295737 Score = 223 bits (246), Expect = 4e-53 Identities = 308/435 (71%), Gaps = 3/435 (1%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | ||| |||||||| || |||||| |||||||||||||||||||||||||| Sbjct 8295737 GCCATGCCGCGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 8295796 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || ||||| | | || ||| || || || |||||||| | ||||||||| || Sbjct 8295797 CGCGGCGGCGGCGCCGCGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 8295856 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||||| ||| |||||||||| ||||||||||||||| | || | | | Sbjct 8295857 GCCGAGCTGGAGCGGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCTCGGGCC 8295916 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| || |||| ||| |||| | | | || | | | || Sbjct 8295917 GAGCCGCGGGAGGCGGCCGCGCTGCTGGGAAGGGTGGCGGCGCAGCTGGAGGCTGACGGC 8295976 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | | || ||| |||| ||||||| | ||| Sbjct 8295977 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCGCG 8296036 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| ||||| | || ||||| || || ||||||| |||||||| ||| Sbjct 8296037 CTGGCCGAGCGGGGCTGCGGCGACGGGCCGCGCTGCCTGGCCGCCCACCTGGCCGCCTAC 8296096 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| ||||||||| || || ||||||||||||||| ||| || || Sbjct 8296097 CTGGCCGAGGAGCGCGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGCGGGGACGGG 8296156 Query 157503 GCGGGCATGAGCGGC 157517 ||||| ||||||| Sbjct 8296157 GCGGG---GAGCGGC 8296168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509173338960000