Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq12 394 6e-105 seq32 86.0 4e-12 >seq12 Length=20202851 Score = 394 bits (436), Expect = 6e-105 Identities = 758/1111 (68%), Gaps = 20/1111 (2%) Strand=Plus/Minus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || ||||||||| |||| | |||| | || Sbjct 4814722 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCAGAAAGCCATCCGGGAGGCGCAGCTCAG 4814663 Query 107582 CAACCTGGAAGTGAAGAA---AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACAT 107638 |||||| |||||| ||| |||| || || | ||| | ||||| ||||| Sbjct 4814662 CAACCTCGAAGTGGCGAACAGAAAGGCTTCACCGACGCCGGGCG---AATACCTGAACAT 4814606 Query 107639 AACCAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGA 107694 || || ||||| |||| |||||||| ||| || | ||| |||| || || | Sbjct 4814605 TACGAGGGACTGCAGAGC-CTTCAAGGAGACCC---GGCGCTACATCGAGTTTCCCCTCA 4814550 Query 107695 GTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 | | || ||| ||||||||||| |||||||| ||||| |||| | || || || | Sbjct 4814549 GCCAGGAGGAGAAGGACTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGACA 4814490 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| ||||| ||||| |||| || |||| ||||| | ||||||||||| |||| Sbjct 4814489 TGTTTGAGCGGCTCCTGCGGTCCGTCTACTCCCCCCAGAATGTGTACTGTGTCCATGTGG 4814430 Query 107815 ATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCA 107874 | || ||||| | | ||| | ||||| || ||||||| | |||||||||||| Sbjct 4814429 ACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCATTGCTGCCTGCTTCCCCA 4814370 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 | |||||| ||||||| ||| ||||| |||||| |||||||| | |||| | Sbjct 4814369 ACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCCGCCTGGTCCCGGCTGCAGG 4814310 Query 107935 CTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGA 107994 | ||||| ||||| ||| | ||| |||| |||||| | ||||| ||| ||| | | | Sbjct 4814309 CCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGGCGATACCTCATCA 4814250 Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGA 108054 | || ||||| || ||||||||||| |||||||||| |||||| |||| ||| || || Sbjct 4814249 ACACTTGCGGCACCGACTTCCCCATCAAGACCAATGGCGAGATAGTCCGGGCGCTGCAGC 4814190 Query 108055 TGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCT 108114 || || |||| | |||| ||||||| ||| || || | |||| | | |||| Sbjct 4814189 TGCTGCAGGGCCATAACAACGTGGAGTCGGAGAAGCCCTCAGCCGCCAAGCAGCAGCGCT 4814130 Query 108115 GGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTC 108174 || | |||| | | |||||| || || | | | || | ||| ||| || | Sbjct 4814129 GGCAGTACCACCACGAGGTGGGGGAGACCATCTCTCGCACTGCCCAGAAGAAACTGCCGC 4814070 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 | || | | | ||||||||||| || | || || | || | | || | ||||| Sbjct 4814069 CGCCCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCGGTCACACGGGACTTTG 4814010 Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294 | || | ||||| || ||||| | | |||| | | || ||| ||| |||| || Sbjct 4814009 TGCAGTACGTCTTCGAGAACCCCACGGCACAAAAGTTCCTCGAGTGGTCCAAGGACAGCT 4813950 Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCT 108351 | ||||| ||||| ||| ||||||||||||| | || ||| | |||| ||| Sbjct 4813949 ACAGCCCTGACGAGCACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCA 4813890 Query 108352 CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCA 108411 || || ||| | ||||| || |||| ||||||| || | || | || |||| Sbjct 4813889 CTCCCCCCAGCGA---CAAGTTCCAGCTCTCGGACATGAACGCTCTTCCCCGCCTGGTCA 4813833 Query 108412 AGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAA 108471 ||||| |||||| ||||| || |||||| ||| ||| | || | |||||| | || Sbjct 4813832 AGTGGGAGTACCTGGAGGGGGACATCAGCAAGGGCGCGGCCTACCCGCCCTGCACCGGCC 4813773 Query 108472 TCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACC 108531 ||| | | | |||||||||| ||||||| || ||| || |||||| || ||| | | Sbjct 4813772 GCCACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGC 4813713 Query 108532 ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAG 108591 | || |||||||| |||||||| ||||| |||||| ||| | ||| ||||| | | Sbjct 4813712 ACCATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCCTCCAGTGTCTCG 4813653 Query 108592 AAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | ||| |||| || || |||||| | || || Sbjct 4813652 AGGAGCACCTGCGCCACAAGGCCCTGTACGG 4813622 >seq32 Length=74514349 Score = 86.0 bits (94), Expect = 4e-12 Identities = 220/330 (67%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 108230 CTTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAG 108288 |||||| || |||| |||| ||| | |||| | ||| | |||| |||| |||| Sbjct 33618715 CTTTGTAGAATATGTACTAGAAAACAGCAAAATACTTAAGT-TCATTGAGTGGGCGAAAG 33618773 Query 108289 ACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCT 108347 | || || ||||| || || |||| ||||| || ||||| | ||| || | | || Sbjct 33618774 ATACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA-TCCCTGAAGTCCCA 33618832 Query 108348 GGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407 ||| | || || | ||||||| || | || ||||||| ||| | ||||| | Sbjct 33618833 GGCGCATTTTCTTCCAGTGACAAGTATGACGTTTCTGACATGAATGCACTGGCCAGATTT 33618892 Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCT 108467 ||||||||||||||| || || ||||| || || || || || |||| ||| | Sbjct 33618893 GTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCACCCTACCCACCATGCAGT 33618952 Query 108468 GGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAG 108527 ||| | || | | |||| ||| || | || ||| || ||||||| || | Sbjct 33618953 GGAGTTCACATTCGCTCTGTCTGTGTTTTTGGAGTAGGAGACTTGAACTGGATGCTACGA 33619012 Query 108528 AACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||| | || || || ||||||||| Sbjct 33619013 AACCACCACTTATTTGCTAATAAGTTTGAC 33619042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348261690418950