Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq6 102 1e-16 seq1 86.0 8e-12 >seq2 Length=150265477 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| | ||| | ||| | Sbjct 130841010 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 130841069 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 130841070 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 130841129 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 130841130 CAACCACTCTCTCACC 130841145 >seq6 Length=71365269 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 9456 AAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGT 9515 |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||||| || Sbjct 32304437 AAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGC 32304496 Query 9516 AGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACG 9575 | ||||||||||||| ||||||| || |||| ||| || || || ||||||| ||| Sbjct 32304497 AAGGTATATGCAGTCAATCCAAGAAATACAGCAGCAGTAAGAATAAAGGCTTGCAAGACG 32304556 Query 9576 ACATGCACATCATAGAAAGTAAC----AACAGAG 9605 | |||||||||||| | || ||||||| Sbjct 32304557 ATGGAGACATCATAGAAACTCACTATAAACAGAG 32304590 >seq1 Length=114059860 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||| ||||| ||||||||||| ||||| || || | || | || |||| || || Sbjct 25232 CACTCGCTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTG 25291 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 25292 CTCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 25351 Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | ||||||| Sbjct 25352 CTCCAGGTAGATGGCAAAAGCTCCAGG 25378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159019507000