Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 123 4e-23 seq1 91.5 2e-13 >seq2 Length=150265477 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| | ||| | ||| | Sbjct 130841010 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 130841069 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 130841070 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 130841129 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 130841130 CAACCACTCTCTCACC 130841145 >seq1 Length=114059860 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || | || || || |||| || ||| Sbjct 25233 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGC 25292 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 25293 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 25352 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 25353 TCCAGGTAGATGGCAAAAGCTCCAGGTC 25380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || |||||||| || || || ||||| || | |||||| | | Sbjct 30316 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 30375 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||| || || || || | || || ||||| || | || || ||||||||||||| Sbjct 30376 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 30435 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || ||||| || || || | || | || ||||| |||||||| Sbjct 30436 GCTCCACCGTGGTGACCCCGCTGTACAGCCCCTGGATCACCTTCAT 30481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253761247000