Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq3 111 2e-19 seq1 93.3 6e-14 >seq2 Length=150265477 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| | ||| | ||| | Sbjct 130841010 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCT 130841069 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 130841070 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 130841129 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 130841130 CAACCACTCTCTCACC 130841145 >seq3 Length=111636321 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 98374655 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 98374596 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || ||||| |||||||| ||||| ||||| ||||||| Sbjct 98374595 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAGG 98374536 Query 42207 C 42207 | Sbjct 98374535 C 98374535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| ||| |||| || || || || | |||||| |||||||||||||| || ||| Sbjct 98372963 TCTTTAGAATCCTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 98372904 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || | ||||||||| Sbjct 98372903 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 98372850 >seq1 Length=114059860 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || |||||||| || || || ||||| || | |||||| || | Sbjct 30316 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 30375 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||| || || || || | || || ||||| || | ||||| ||||||||||||| Sbjct 30376 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 30435 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || ||||| || || || | || | || ||||| |||||||| Sbjct 30436 GCTCCACCGTGGTGACCCCGCTGTACAGCCCCTGGATCACCTTCAT 30481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||| ||||| || || | || || || |||| || ||| Sbjct 25233 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGC 25292 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || | || |||||| | | || || | |||||||| Sbjct 25293 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 25352 Query 72142 TCCAAGTATATGGCCATAACTCCCGG 72167 |||| ||| ||||| | | |||| || Sbjct 25353 TCCAGGTAGATGGCAAAAGCTCCAGG 25378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125148023000