Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 3e-11 >seq1 Length=114059860 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 |||||||| || || ||||| ||||||||||| || || | || |||||||| | Sbjct 24118 GAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCAG 24059 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || |||||||||||||| || ||| |||||||| || || || |||||| || Sbjct 24058 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACCGAGATCGTGGAGTACACC 24005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953 || || ||| | ||| ||||| |||| || |||||| |||| | ||||| || | || Sbjct 25378 CCTGGAGCTTTTGCCATCTACCTGGAGCCGTGGCACTTGGACATCTTTGAGTTCCTGGAC 25319 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 || || ||| |||| |||||| |||||||||||| |||| | ||| |||||| Sbjct 25318 TTGAAGAAGAACACTGGGAAAGAAGAGCAGCGAGCCAGGGACCTGTTCTTTGCGCTCTGG 25259 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGT 97039 | || ||| | ||||||||||| || Sbjct 25258 ATCCCTGATCTCTTCATGAAGCGAGT 25233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043684073000