Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17 168 2e-36 seq3 154 3e-32 seq2 113 1e-19 seq32 86.0 1e-11 >seq17 Length=13820886 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | |||||||| ||||| || || |||||| Sbjct 1693940 ATCCCTCCTCTGAGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCA 1693881 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| |||||||| || |||||| Sbjct 1693880 GACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGA 1693821 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 1693820 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCG 1693761 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || || || || || ||||| ||||||||| Sbjct 1693760 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1693710 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || ||||||||||| || || |||||| Sbjct 1693712 ATTCCACCCCGCAGGCGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCA 1693653 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||| ||||| |||||||| ||||||||| Sbjct 1693652 GACAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGA 1693593 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || ||||| || | ||| || || || || Sbjct 1693592 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 1693533 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || || || ||||||||||| Sbjct 1693532 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1693480 >seq3 Length=111636321 Score = 154 bits (170), Expect = 3e-32 Identities = 132/163 (81%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| | ||||||||||| || || | ||||| | ||||||||| Sbjct 80860245 GCTTTATGGTGGTATTATGTTTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 80860304 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 80860305 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 80860364 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| ||||| || ||| | ||||| ||||||| Sbjct 80860365 ACCTTGTGGTGGATTGGTATCAAGTGGGTTGCAGGTGGACAAG 80860407 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || ||||| || || |||||||| Sbjct 98374520 GGAGAACGTGTAGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCTTTTGCA 98374579 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 98374580 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 98374639 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 98374640 ATCAGTAGAGATGA 98374653 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || | Sbjct 98372828 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 98372887 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 98372888 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 98372947 Query 269016 T 269016 | Sbjct 98372948 T 98372948 >seq2 Length=150265477 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 130841133 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 130841074 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||| | ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 130841073 CTGAAGAAGAGGGGCTTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 130841014 Query 269258 GA 269259 || Sbjct 130841013 GA 130841012 >seq32 Length=74514349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||||| ||| |||||| | || ||| |||||| Sbjct 59497300 CAGTGAATACTCCACACGGATTATACTACAATCAAGGATTGAAGGAGACACTGGTGGAAT 59497359 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG----GAAGTAGTTGCTTTCCAC 174188 ||||| |||||| |||||| |||| | || |||| ||| | || | |||| Sbjct 59497360 TTTCAACTGTTTGCCATTCCAGGTTTCTGTTTTGCCAGATGACAAGGA-TTCC---CCAC 59497415 Query 174189 GC-GATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGT 174247 || ||| || || || | | | |||| ||| || || | | | |||||||| |||| Sbjct 59497416 GCAGAT-TGGCAACGAGCTGTTTGACTTCCTTCATTTTCCCTTTGGCATAAAATGCCTGT 59497474 Query 174248 ATTTGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCA 174307 ||||||| || | || |||| || |||| || || || ||||| || ||| Sbjct 59497475 GTTTGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCA 59497534 Query 174308 ACTATCCTAACGTATTCACC 174327 | ||| || ||||||| Sbjct 59497535 AAGATCTGAATTGATTCACC 59497554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151373689910900