Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10 170 3e-37 seq18 118 2e-21 >seq10 Length=31324166 Score = 170 bits (188), Expect = 3e-37 Identities = 216/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | || Sbjct 5769500 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 5769441 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| |||| ||||| | || |||||||||||||| |||||||| | |||| Sbjct 5769440 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 5769381 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| || || || ||||| || || ||||||| || | ||| Sbjct 5769380 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 5769321 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 5769320 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5769261 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || ||||| ||||| || || || || || || || || |||||||||| Sbjct 5769260 TGGCATCAATGTCCCCGTAGAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 5769204 >seq18 Length=10486032 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || ||||||||||||||||| | |||| Sbjct 1683210 TCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCCAGTAGTCTGGGG 1683269 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1683270 AGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCAATCTCCACCATGC 1683329 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| ||||||| |||| || || | || || || ||| ||||||| Sbjct 1683330 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTAGGTAAAACTCCA 1683389 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || |||||||| || || | ||||| || || |||| | |||||||| Sbjct 1683390 GAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCTGT 1683447 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || | ||||| || || || ||||||||||| ||||| Sbjct 1685116 TCACCGATGAGGATGAGCCGCGCCGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGGATGG 1685175 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || || || | || || || | |||||| || | ||||||| || ||||||| Sbjct 1685176 TCCCGCTTGAGCAGGTCACAGACGCGGTTGTGCTCGCGTAGCCAGAGCGTGGCGTACACG 1685235 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| ||| || || |||| || || || ||||| || | | |||| Sbjct 1685236 CAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCACTGCCAGCTGCTGCTCCTTGGGC 1685295 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 ||| | | || || | |||||| ||| | | || ||||| ||| || |||| Sbjct 1685296 ACTCCCGACGGGTACACCATGTGAACCGGAGCCTCAGTGACCATGGGCGGGTACA 1685350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708509965262000