Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq17 95.1 1e-14 >seq1 Length=114059860 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||||||| ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 24007 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 24066 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| | |||||||||||||||||| || ||||||||| ||| | Sbjct 24067 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGG 24126 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 24127 ACTCGATGAT 24136 >seq17 Length=13820886 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | ||| | || || ||||| || |||||||| || || ||| || Sbjct 1693925 CGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1693866 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || | || | | ||||||||| |||||||| ||||| || Sbjct 1693865 TCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 1693806 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||||| || | ||| | | Sbjct 1693805 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 1693746 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 1693745 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1693711 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | || |||||||| || |||||||| || | Sbjct 1694165 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAC 1694106 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| | | ||||||||| |||||| Sbjct 1694105 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1694046 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | ||| | || || ||| ||| | Sbjct 1694045 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACT 1693986 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || || || |||||||| Sbjct 1693985 TCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002917232000