Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq17 114 1e-20 >seq17 Length=13820886 Score = 114 bits (126), Expect = 1e-20 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| || | ||| || | |||||| || || ||||| || ||||||||||| | Sbjct 1693938 CCCTCCTCTGAGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGA 1693879 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | || |||| || ||||| ||| ||||||||| ||| ||||| ||| Sbjct 1693878 CAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGG 1693819 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || || || ||| || | | | ||||| | |||||| Sbjct 1693818 GATGCCTTCCTTATCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCG 1693761 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| || |||||||| ||||||||| Sbjct 1693760 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1693710 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| || |||||||| || ||||||||||| | | Sbjct 1694165 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAC 1694106 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 1694105 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1694046 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || ||| || | | | ||||| | ||||||| Sbjct 1694045 ATGCCTTCCTTATCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACTGGGCTCCA 1693988 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 1693987 CTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||| | | Sbjct 1693709 CCACCCCGCAGGCGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1693650 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || || |||| |||| ||| || || ||| Sbjct 1693649 AGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGG 1693590 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | ||||||| Sbjct 1693589 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCCA 1693532 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || || || || ||||||||||| Sbjct 1693531 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1693480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405079730508250