Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq1 95.1 8e-15 >seq6 Length=71365269 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||| || ||||||| ||||| || |||||||| Sbjct 64849309 AAGCCTGTTCCCTTGGCTGTGGTTTCACTGCATAGTAGGTAGGGACAGTGGGAATCTCGT 64849250 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||| |||||||||||| Sbjct 64849249 TCATCCATTCATGTGCATCACTTATTAGATGACGA 64849215 >seq1 Length=114059860 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| ||||||||| ||||||||||| |||||||||||| |||||||| |||| Sbjct 20830209 CTCTCTCTTCGAAGTTCTTTGCAACTTTCCCTTACGGTACTTGTTAGCTATCGGACTCGT 20830268 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 20830269 GCCGGTATTTAGCCTTA 20830285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940362366925